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Ubuntu で基本ソフトウエア類のインストール

Ubuntu で、次のソフトウエアをインストールするためのスクリプトを示します。 Ubuntuの端末を使って、コマンドでインストールします.

目次

  1. 前準備
  2. ここでインストールする基本ソフトウエア
  3. 基本ソフトウエアのインストール手順

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前準備

Ubuntu のシステム更新などを終わっておくこと

端末を開き、次を実行

sudo apt update
sudo apt -yV upgrade
sudo apt -yV dist-upgrade
sudo apt -yV autoremove
sudo apt autoclean
sudo shutdown -r now

ここでインストールする基本ソフトウエア


基本ソフトウエアのインストール手順

ソースコードからのビルドに有用なソフトウエアのインストール

sudo apt -yV install build-essential pkg-config python3-dev python3-pip python3-numpy
sudo apt -yV install gcc g++ git make cmake cmake-curses-gui autoconf automake flex bison 
sudo apt -yV install libopenblas-dev liblapack-dev nvidia-cuda-dev nvidia-cuda-toolkit 
sudo apt -yV install libxi-dev libsndfile1-dev libopenexr-dev libjpeg-dev libalut-dev libsdl-dev libavdevice-dev libavformat-dev libavutil-dev libavcodec-dev libswscale-dev libx264-dev libxvidcore-dev libmp3lame-dev libspnav-dev libglu1-mesa-dev libv4l-dev
sudo apt -yV install libbz2-dev libsqlite3-dev libssl-dev libreadline-dev libpng-dev libjpeg-dev libtiff-dev zlib1g-dev libx11-dev libgl1-mesa-dev libxrandr-dev libxxf86dga-dev libxcursor-dev libfreetype6-dev libvorbis-dev libeigen3-dev libopenal-dev libode-dev libbullet-dev nvidia-cg-toolkit libgtk2.0-dev

プログラミング,開発環境

  1. pyenv, virtualenv
    sudo apt -yV install git
    cd /tmp
    git clone http://github.com/yyuu/pyenv.git ~/.pyenv
    cd ~/.pyenv
    git pull
    
    echo 'export PYENV_ROOT="${HOME}/.pyenv"' >> ~/.bashrc
    echo 'if [ -d "${PYENV_ROOT}" ]; then' >> ~/.bashrc
    echo '    export PATH=${PYENV_ROOT}/bin:$PATH' >> ~/.bashrc
    echo '    eval "$(pyenv init -)"' >> ~/.bashrc
    echo 'fi' >> ~/.bashrc
    exec $SHELL -l
    mkdir $PYENV_ROOT/plugins
    cd $PYENV_ROOT/plugins
    git clone http://github.com/yyuu/pyenv-virtualenv.git
    pyenv install -l
    

  2. python 3.6, anaconda3, python 2.7.15

    anaconda3-5.2.0」、「2.7.15」のところは、「pyenv versions」の結果を見て、適切に設定すること(最新版をおすすめ)

    pyenv rehash 
    pyenv install -l 
    sudo apt -yV install libbz2-dev libsqlite3-dev libssl-dev libreadline-dev libpng-dev libjpeg-dev zlib1g-dev libx11-dev libfreetype6-dev
    CONFIGURE_OPTS="--enable-shared" pyenv install anaconda3-5.2.0
    CONFIGURE_OPTS="--enable-shared" pyenv install 2.7.15
    pyenv versions
    #
    pyenv shell anaconda3-5.2.0
    cd /tmp
    sudo rm -f get-pip.py
    wget https://bootstrap.pypa.io/get-pip.py
    python get-pip.py
    python 
    print(1 + 2)
    exit()
    #
    pyenv shell 2.7.15
    cd /tmp
    sudo rm -f get-pip.py
    wget https://bootstrap.pypa.io/get-pip.py
    python get-pip.py
    python 
    print 1 + 2
    exit()
    

  3. anaconda3-5.2.0 の環境に conda-build

    anaconda3-5.2.0」のところは、実際にインストールした版を設定すること

    pyenv shell anaconda3-5.2.0
    conda install -y conda-build
    

  4. anaconda3-5.2.0 の環境に pip, setuptoolsa

    anaconda3-5.2.0」のところは、実際にインストールした版を設定すること

    pyenv shell anaconda3-5.2.0
    conda update -y pip
    conda update -y setuptools
    conda update -y conda
    conda update -y conda-build
    

  5. anaconda3-5.2.0 の環境に Chainer, Tensorflow その他,python パッケージ

    anaconda3-5.2.0」のところは、実際にインストールした版を設定すること

    pyenv shell anaconda3-5.2.0
    pip install --ignore-installed --upgrade ipykernel
    conda update -y --all
    conda install -y numpy
    conda install -y six
    conda install -y protobuf
    conda install -y pillow
    conda install -y hdf5
    conda install -y h5py
    conda install -y chainer
    #
    conda install -y scikit-learn
    conda install -y scikit-image
    conda install -y matplotlib
    conda install -y seaborn
    conda install -y graphviz
    conda install -y pydot
    conda install -y yaml
    conda install -y flask
    conda install -y django
    conda install -y sympy
    conda install -y pandas
    conda install -y sqlite
    conda install -y redis
    conda install -y scipy
    conda install -y gensim
    conda install -y cython
    conda install -y opencv
    conda install -y pylint
    pip install --ignore-installed --upgrade msgpack
    pip install --ignore-installed --upgrade tensorboard
    pip install --ignore-installed --upgrade tensorflow
    pip install --ignore-installed --upgrade keras
    pip install --ignore-installed --upgrade pyglet
    pip install --ignore-installed --upgrade pygame
    pip install --ignore-installed --upgrade cocos2d
    pip install --ignore-installed --upgrade geopandas
    pip install --ignore-installed --upgrade overpy
    conda install -y -c conda-forge folium
    conda install -y -c conda-forge exifread
    conda install -y -c conda-forge haversine
    conda install -y -c conda-forge utm
    conda install -y -c conda-forge gdal
    #again
    conda install -y conda
    conda update -y --all
    

  6. python 2.7.15 の環境に いくつかの python パッケージ

    2.7.15」のところは、実際にインストールした版を設定すること

    pyenv shell 2.7.15
    pip install --upgrade pip
    pip install numpy 
    pip install PyOpenGL 
    

  7. Ubuntu システムの Python3 の環境に いくつかの python パッケージ

    ubuntu 16.04 用

    python3-django
    python3-exif
    python3-flask
    python3-gdal
    python3-geopandas
    python3-pygraphviz
    python3-h5py 
    python3-matplotlib
    python3-numpy
    python3-pandas
    python3-pydot
    python3-redis
    python3-skimage
    python3-sklearn
    python3-scipy
    python3-seaborn
    python3-six 
    python3-sympy
    python3-yaml
    

  8. Rシステム, R.Studio(R開発環境)
    cd /tmp
    # tbd
    sudo apt -yV install r-base
    sudo apt -yV install r-recommended
    sudo apt -yV install rstudio
    if [ ! -x /usr/bin/rstudio ]; then 
        echo /usr/bin/rstudio
        wget https://download1.rstudio.org/rstudio-xenial-1.1.447-amd64.deb
        sudo dpkg -i rstudio-xenial-1.1.447-amd64.deb
    fi
    

  9. Java JDK 8
    sudo add-apt-repository ppa:webupd8team/java
    sudo apt -yV install oracle-java8-installer
    sudo apt -yV install oracle-java8-set-default
    java -version
    

  10. GNU Octave 及び関連パッケージ
    sudo apt -yV install octave octave-*
    

  11. Java 開発環境 BlueJ, Java 学習環境 Greenfoot
    sudo apt -yV install libopenjfx-java
    cd /tmp
    wget http://www.bluej.org/download/files/BlueJ-linux-412.deb
    sudo dpkg -i BlueJ-linux-412.deb
    cd /tmp
    wget http://www.greenfoot.org/download/files/Greenfoot-linux-310.deb
    sudo dpkg -i Greenfoot-linux-310.deb
    

  12. Java 開発環境 Eclipse, pleiades
    sudo apt -yV install eclipse pleiades
    

  13. scracth

    Ubuntu では scratch

    sudo apt -yV install scratch
    

ツール

sudo apt -yV install git
sudo apt -yV install cmake
sudo apt -yV install cmake-gui
sudo apt -yV install p7zip-full
sudo apt -yV install net-tools
sudo apt -yV install imagemagick
sudo apt -yV install gdal-bin libgdal-dev

アクセサリ

sudo apt -yV install shutter
sudo apt -yV install catfish

インターネット

# tbd
sudo apt -yV install filezilla
sudo apt -yV install firefox
sudo apt -yV install wireshark

エディタ

sudo apt -yV install emacs
# Visual Studio Code
# see https://code.visualstudio.com/docs/setup/linux
cd /tmp
curl https://packages.microsoft.com/keys/microsoft.asc | gpg --dearmor > microsoft.gpg
sudo mv microsoft.gpg /etc/apt/trusted.gpg.d/microsoft.gpg
sudo sh -c 'echo "deb [arch=amd64] https://packages.microsoft.com/repos/vscode stable main" > /etc/apt/sources.list.d/vscode.list'
sudo apt update
sudo apt -yV install code

グラフィックス

sudo apt -yV install blender
sudo apt -yV install povray povray-examples
sudo apt -yV install meshlab
sudo apt -yV install inkscape
sudo apt -yV install gimp
sudo apt -yV install pinta
#
# Blender VR
cd /tmp
sudo rm -f blender-2.74-a8adeeb-linux-glibc211-x86_64.tar.bz2
wget ftp://blendervrdownloads:blendervr@ftp.limsi.fr/compiled/blender-2.74-a8adeeb-linux-glibc211-x86_64.tar.bz2
cd /usr/local
sudo rm -rf /usr/local/blender-2.74-a8adeeb-linux-glibc211-x86_64
sudo tar -xpvjof /tmp/blender-2.74-a8adeeb-linux-glibc211-x86_64.tar.bz2
sudo chown -R $USER /usr/local/blender-2.74-a8adeeb-linux-glibc211-x86_64
sudo rm -f /usr/bin/blendervr
sudo ln -s /usr/local/blender-2.74-a8adeeb-linux-glibc211-x86_64/blender /usr/bin/blendervr

地図情報

# tbd
sudo apt -yV install gdal-bin libgdal-dev

ビデオ

sudo apt -yV install vlc
sudo apt -yV install openshot
sudo apt -yV install ffmpeg

データベース

ライブラリ

OpenCV(コンピュータビジョン), CUDA 9.1 (cuda-9-1), OpenALPR, OpenNI, libPCL, Guava, Dlib

# tbd
sudo apt -yV install libcv-dev
sudo apt -yV install nvidia-cuda-dev nvidia-cuda-doc nvidia-cuda-gdb nvidia-cuda-toolkit
sudo apt -yV install openalpr openalpr-utils libopenalpr-dev
sudo apt -yV install openni2-utils libopenni2-dev primesense-nite-nonfree
sudo apt -yV install libpcl-dev
sudo apt -yV install libguava-java
# dlib
cd /tmp
wget http://dlib.net/files/dlib-19.13.tar.bz2
tar -xvjof dlib-19.13.tar.bz2
pyenv shell anaconda3-5.2.0
cd dlib-19.13
python setup.py build
python setup.py install

ゲームフレームワーク,ゲームエンジン

# panda3d
pip install --user --pre --user --extra-index-url https://archive.panda3d.org/ panda3d

Rのパッケージを追加

cd /tmp

sudo apt -yV install libxml2-dev libfftw3-dev libfreetype6-dev

echo 'options(repos="http://cran.rstudio.com"); update.packages(checkBuilt=TRUE, ask=FALSE)' | sudo R --vanilla 

echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
cat /tmp/a.$$.r | sudo R --vanilla 


# EBImage
sudo rm /tmp/a.$$.r
echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r 
echo 'biocLite("EBImage") ' >> /tmp/a.$$.r 
cat /tmp/a.$$.r | sudo R --vanilla 

# dplyr
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("dplyr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 

# qvalue
sudo rm /tmp/a.$$.r
echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r 
echo 'biocLite("qvalue") ' >> /tmp/a.$$.r 
cat /tmp/a.$$.r | sudo R --vanilla 

# pam
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("pam", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 

# pca3d
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("pca3d", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 

# tm 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("tm", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 

# mmand
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("mmand", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# devtools
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("devtools", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# ctv
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("ctv", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# osmar
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("osmar", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# pi0
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("pi0", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# leaps
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("leaps", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# ifs 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("ifa", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# BMA
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("BMA", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# WriteXLS
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("WriteXLS", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# CHsharp
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("CHsharp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# brew
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("brew", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# data.table
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("data.table", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# pcaPP
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("pcaPP", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# fastICA
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("fastICA", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# zoo
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("zoo", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 

# base 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("abind", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("boot", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("car", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("chron", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("cluster", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("codetools", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("colorspace", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("effects", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("foreign", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("lattice", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("lmtest", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("mgcv", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("multcomp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("mvtnorm", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("relimp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("rpart", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("sandwich", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("sm", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("spatial", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("strucchange", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("survival", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# additional 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("catspec", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("cluster", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("deldir", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("diagram", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("fields", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("fftw", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("gregmisc", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("igraph", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("nlme", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("nnclust", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("png", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("pixmap", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("pvclust", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("rgl", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("scatterplot3d", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("som", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 

echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("Hmisc", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("Rcmdr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("RcmdrPlugin.KMggplot2", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("RSQLite", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("CCA", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("KernSmooth", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("MASS", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("Matrix", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("Rcmdr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# more 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("ggplot2", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("xlsxjars", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("xlsx", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("shiny", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("chron", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("sqldf", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("plyr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("entropy", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("moments", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("spatstat", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("png", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("biOps", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("biOpsGUI", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("maptools", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("caTools", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
# echo 'install.packages("class", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
# cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("evd", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("its", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("mapproj", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("mnormt", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("sm", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("sp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("stabledist", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("timeSeries", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("tseries", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("bayesm", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("gdata", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("gmodels", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("rpart", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("Zelig", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("forecast", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 

# again 
echo 'options(repos="http://cran.rstudio.com")' > /tmp/a.$$.r 
echo 'update.packages(checkBuilt=TRUE, ask=FALSE, repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 

#
sudo rm /tmp/a.$$.r
echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r 
echo 'biocLite("osmar") ' >> /tmp/a.$$.r 
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r 
echo 'biocLite("Rgraphviz") ' >> /tmp/a.$$.r 
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r 
echo 'biocLite("hypergraph") ' >> /tmp/a.$$.r 
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r 
echo 'biocLite("RBGL") ' >> /tmp/a.$$.r 
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r 
echo 'biocLite("GraphPart") ' >> /tmp/a.$$.r 
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("XML", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("gridExtra", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("gridSVG", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("png", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("jpeg", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("igraph", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("Rcpp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("RcppExamples", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("mvoutlier", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("randomForest", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("plyr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("reshape2", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("forecast", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("stringr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("lubridate", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("sqldf", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("ggplot2", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("party", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("gdm", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("survival", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("caTools", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("Epi", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("vcd", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("Rz", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("parallel", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("compiler", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("Imap", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("changepoint", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("gstat", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("sp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("rgeos", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("maptools", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("shapefiles", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("spsurvey", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("sp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("RColorBrewer", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("forecast", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("psych", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("xts", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("timeSeries", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("gregmisc", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("mclust", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("topmodel", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("insol", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("rJava", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("RWekajars", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("RWeka", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("Snowball", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("lsa", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("stringdist", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# again 
echo 'options(repos="http://cran.rstudio.com")' > /tmp/a.$$.r 
echo 'update.packages(checkBuilt=TRUE, ask=FALSE, repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# again and again
echo 'options(repos="http://cran.rstudio.com")' > /tmp/a.$$.r 
echo 'update.packages(checkBuilt=TRUE, ask=FALSE, repos="http://cran.rstudio.com/") ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
以下書きかけ