Ubuntu のセットアップ（Ubuntu のインストールと設定，アプリケーションソフトウェアのインストール及び設定手順）

sudo apt -y update
sudo apt -yV upgrade
sudo /sbin/shutdown -r now

sudo apt -y update
sudo apt -y install emacs emacs-mozc fcitx-libs-dev

sudo apt -y update
sudo apt -y install build-essential gcc g++ make libtool texinfo dpkg-dev pkg-config

cd /tmp
gedit hello.c

#include<stdio.h>
int main() {
    printf("Hello,World!\n");
    printf("sizeof(size_t)=%ld\n", sizeof(size_t));
    return 0;
}

cd /tmp
gcc hello.c
./a.out

lspci | grep -i nvidia | grep VGA

echo 'blacklist nouveau' | sudo tee -a /etc/modprobe.d/blacklist-nouveau.conf
echo 'options nouveau modeset=0' | sudo tee -a /etc/modprobe.d/blacklist-nouveau.conf
cat /etc/modprobe.d/blacklist-nouveau.conf
sudo update-initramfs -u

dpkg -l | grep cuda 
cd /tmp
sudo apt --purge remove -y nvidia-*
sudo apt --purge remove -y cuda-*
sudo apt autoremove -y

sudo apt -y update
sudo apt -y install linux-headers-$(uname -r)

sudo apt -y update
sudo apt -y upgrade
sudo apt dist-upgrade
ubuntu-drivers devices
sudo ubuntu-drivers autoinstall
sudo update-initramfs -u

sudo /sbin/shutdown -r now

uname -m
lsb_release -sc
cat /etc/*release

sudo wget -O /etc/apt/preferences.d/cuda-repository-pin-600 https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2204/x86_64/cuda-ubuntu2204.pin
sudo apt-key adv --fetch-keys https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2204/x86_64/3bf863cc.pub
sudo add-apt-repository "deb https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2204/x86_64/ /"

sudo wget -O /etc/apt/preferences.d/cuda-repository-pin-600 https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/cuda-ubuntu2004.pin
sudo apt-key adv --fetch-keys https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/7fa2af80.pub
sudo add-apt-repository "deb https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/ /"

cd /tmp
wget https://developer.download.nvidia.com/compute/cuda/repos/ubuntu1804/x86_64/cuda-repo-ubuntu1804_10.1.243-1_amd64.deb
sudo dpkg -i cuda-repo-ubuntu1804_10.1.243-1_amd64.deb
sudo apt-key adv --fetch-keys https://developer.download.nvidia.com/compute/cuda/repos/ubuntu1804/x86_64/7fa2af80.pub
sudo apt -y update

apt-cache search cuda-11

sudo apt -y update
sudo apt -y install cuda-11-8
sudo update-initramfs -u
sudo /sbin/shutdown -r now

export CUDA_PATH=/usr/local/cuda-11.8
echo 'export CUDA_PATH=/usr/local/cuda-11.8' >> ${HOME}/.bashrc
export LD_LIBRARY_PATH=/usr/local/cuda-11.8/lib64:${LD_LIBRARY_PATH}
echo 'export LD_LIBRARY_PATH=/usr/local/cuda-11.8/lib64:${LD_LIBRARY_PATH}' >> ${HOME}/.bashrc
export PATH=/usr/local/cuda-11.8/bin:${PATH}
echo 'export PATH=/usr/local/cuda-11.8/bin:${PATH}' >> ${HOME}/.bashrc

cat /usr/local/cuda-11.5/version.json

apt-cache search cudnn

sudo apt -y update
sudo apt -y install libcudnn8 libcudnn8-dev

dpkg -l | grep cudnn

cd /tmp
wget https://developer.download.nvidia.com/compute/machine-learning/repos/ubuntu1804/x86_64/nvidia-machine-learning-repo-ubuntu1804_1.0.0-1_amd64.deb
sudo dpkg -i nvidia-machine-learning-repo-ubuntu1804_1.0.0-1_amd64.deb
sudo apt-key adv --fetch-keys https://developer.download.nvidia.com/compute/machine-learning/repos/ubuntu1804/x86_64/7fa2af80.pub
sudo apt -y update

apt-cache search cudnn

sudo apt -y update
sudo apt -y install libcudnn8 libcudnn8-dev

gedit hello.cu

del a.exe
nvcc hello.cu

sudo apt -y update
sudo apt -y install git cmake cmake-curses-gui cmake-gui curl wget p7zip-full

sudo apt -y update
sudo apt -y install python-is-python3 python3-dev python-dev-is-python3 python3-pip python3-setuptools python3-venv build-essential

sudo apt -y update
sudo apt -y install python-is-python3 python3-dev python-dev-is-python3 python3-pip python3-setuptools python3-venv build-essential
sudo pip3 uninstall ptyprocess sniffio terminado tornado jupyterlab jupyter jupyter-console jupytext nteract_on_jupyter spyder
sudo apt -y install jupyter jupyter-qtconsole spyder3
sudo apt -y install python3-ptyprocess python3-sniffio python3-terminado python3-tornado
sudo pip3 install -U jupyterlab jupyter jupyter-console jupytext nteract_on_jupyter

python3 --version

sudo apt -y update
sudo apt -y install python3-numpy python3-matplotlib

import numpy as np
%matplotlib inline
import matplotlib.pyplot as plt
import warnings
warnings.filterwarnings('ignore')   # Suppress Matplotlib warnings

x = np.linspace(0, 6, 100)
plt.style.use('default')
plt.plot(x, np.sin(x))

import numpy as np
%matplotlib inline
import matplotlib.pyplot as plt
import warnings
warnings.filterwarnings('ignore')   # Suppress Matplotlib warnings

x = np.linspace(0, 6, 100)
plt.style.use('default')
plt.plot(x, np.sin(x))

jupyter notebook --generate-config

sudo apt -y update
sudo apt -y install python3-numpy python3-sklearn

python3
import numpy as np
print(np.sin(0))
exit()

import time
import numpy
import numpy.linalg
import sklearn.decomposition
import sklearn.cluster
X = numpy.random.rand(2000, 2000)
Y = numpy.random.rand(2000, 2000)
# 行列の積
a = time.time(); Z = numpy.dot(X, Y); print(time.time() - a)
# 主成分分析
pca = sklearn.decomposition.PCA(n_components = 2)
a = time.time(); pca.fit(X); X_pca = pca.transform(X); print(time.time() - a)
# SVD
a = time.time(); U, S, V = numpy.linalg.svd(X); print(time.time() - a)
# k-means
a = time.time(); 
kmeans_model = sklearn.cluster.KMeans(n_clusters=10, random_state=10).fit(X)
labels = kmeans_model.labels_
print(time.time() - a)

sudo apt -y remove python3-keras
sudo pip3 uninstall -y tensorflow tensorflow-cpu tensorflow-gpu tensorflow-intel tensorflow-text tensorflow-estimator tf-models-official tf_slim tensorflow_datasets tensorflow-hub keras keras-tuner keras-visualizer

sudo pip3 uninstall -y six wheel astunparse tensorflow-estimator numpy keras-preprocessing absl-py wrapt gast flatbuffers grpcio opt-einsum protobuf termcolor typing-extensions google-pasta h5py tensorboard-plugin-wit markdown werkzeug requests-oauthlib rsa cachetools google-auth google-auth-oauthlib tensorboard tensorflow
sudo apt -y install python3-six python3-wheel python3-numpy python3-grpcio python3-protobuf python3-termcolor python3-typing-extensions python3-h5py python3-markdown python3-werkzeug python3-requests-oauthlib python3-rsa python3-cachetools python3-google-auth

sudo apt -y update
sudo apt -y install python3-numpy python3-pil python3-pydot python3-matplotlib
sudo apt -y install libopencv-dev libopencv-core-dev python3-opencv libopencv-contrib-dev opencv-data
sudo pip3 install -U tensorflow tf-models-official tf_slim tensorflow_datasets tensorflow-hub keras keras-tuner keras-visualizer 
sudo pip3 install git+https://github.com/tensorflow/docs
sudo pip3 install git+https://github.com/tensorflow/examples.git
sudo pip3 install git+https://www.github.com/keras-team/keras-contrib.git

python3 -c "import tensorflow as tf; print( tf.__version__ )"

python3 -c "from tensorflow.python.client import device_lib; print(device_lib.list_local_devices())"

環境変数の名前
TF_FORCE_GPU_ALLOW_GROWTH
値
true

export TF_FORCE_GPU_ALLOW_GROWTH=true
echo 'export TF_FORCE_GPU_ALLOW_GROWTH=true' >> ${HOME}/.bashrc

sudo apt -y update
sudo apt -y install python3-h5py python3-pillow

cd ＜画像を置いたディレクトリ＞
python3

import h5py
from tensorflow.keras.preprocessing import image
from tensorflow.keras.applications.vgg16 import VGG16
from tensorflow.keras.applications.vgg16 import preprocess_input
import numpy as np

m = VGG16(weights='imagenet', include_top=False)

img_path = '10.png'
img = image.load_img(img_path, target_size=(299, 299))
x = image.img_to_array(img)
x = np.expand_dims(x, axis=0)
x = preprocess_input(x)

features = m.predict(x)
print(features)

import h5py
from tensorflow.keras.preprocessing import image
from tensorflow.keras.applications.inception_v3 import preprocess_input, decode_predictions, InceptionV3
import numpy as np

m = InceptionV3(weights='imagenet')

img_path = '10.png'
img = image.load_img(img_path, target_size=(299, 299))
x = image.img_to_array(img)
x = np.expand_dims(x, axis=0)
x = preprocess_input(x)

preds = m.predict(x)

print('Predicted:')
for p in decode_predictions(preds, top=5)[0]:
    print("Score {}, Label {}".format(p[2], p[1]))

sudo pip3 install -U torch torchvision torchaudio --extra-index-url https://download.pytorch.org/whl/cu117

python3 -c "import torch; print( torch.__version__ )"

from __future__ import print_function
import torch
x = torch.rand(5, 3)
print(x)
exit()

import torch
torch.cuda.is_available()
exit()

cd /tmp
rm -rf chainer
git clone https://github.com/chainer/chainer.git
cd /tmp/chainer
sudo CUDA_PATH="/usr/local/cuda" CFLAGS="-I/usr/local/cuda/include" LDFLAGS="-L/usr/local/cuda/lib64" pip3 -v install .

sudo apt -y update
sudo apt -y install python-is-python3 python3-dev python-dev-is-python3 python3-pip python3-setuptools python3-venv build-essential
sudo apt -y install libgeographic-dev gdal-bin gdal-data libgdal-dev
sudo apt -y install python3-numpy python3-scipy python3-h5py python3-sklearn python3-skimage python3-seaborn python3-pandas python3-pil cython3 python3-pytest python3-yaml cython3 python3-statsmodels python3-plotly python3-sympy python3-csvkit python3-docopt python3-pyproj python3-flake8 python3-protobuf python3-bs4 python3-html5lib python3-rope python3-wrapt python3-cffi python3-wheel python3-six python3-sphinx python3-bottleneck python3-pygments python3-numexpr python3-xlrd python3-xlwt python3-lxml python3-graphviz python3-pydot python3-flask python3-django python3-redis python3-pylint-common python3-bz2file python3-opengl  python3-msgpack python3-mecab python3-matplotlib-venn python3-pygame python3-bottle python3-rtree python3-shapely python3-fiona python3-gdal python3-geopandas python3-geopy python3-geographiclib python3-requests
sudo pip3 install -U pandasql pyyaml bokeh pymc3 mkl mkl-include holoviews pandas-bokeh ggplot prettyplotlib pybrain3 firebase-admin googletrans google-cloud-vision gpyocr azure-cognitiveservices-vision-computervision gensim gloo scikit-video scikits.datasmooth scikits.example scikits.fitting scikits.optimization scikits.vectorplot zodb gdata pyr2 pycaret

sudo pip3 install git+https://github.com/jrosebr1/imutils.git
python3 -c "import imutils; print(imutils.__version__)"
sudo pip3 install git+https://github.com/DinoTools/python-overpy.git
python3 -c "import overpy; print(overpy.__version__)"
sudo pip3 install git+https://github.com/ianare/exif-py.git
python3 -c "import exifread; print(exifread.__version__)"
sudo pip3 install git+https://github.com/mapado/haversine.git
sudo pip3 install git+https://github.com/Turbo87/utm.git

sudo apt -y update
sudo apt -y install python3-pyproj python3-rtree python3-shapely python3-fiona gdal-bin gdal-data python3-gdal python3-geopandas libgdal-dev
# cd /usr/local
# sudo rm -rf geopandas
# sudo git clone https://github.com/geopandas/geopandas
# cd geopandas
# sudo python3 setup.py build
# sudo python3 setup.py install 

# folium
sudo pip3 install -q git+https://github.com/python-visualization/folium.git

cd /tmp
git clone https://github.com/pyenv/pyenv.git ~/.pyenv
cd ~/.pyenv
git pull
src/configure 
make -C src

echo 'export PYENV_ROOT="${HOME}/.pyenv"' >> ~/.profile
echo 'if [ -d "${PYENV_ROOT}" ]; then' >> ~/.profile
echo '    export PATH=${PYENV_ROOT}/bin:$PATH' >> ~/.profile
echo '    eval "$(pyenv init --path)"' >> ~/.profile
echo 'fi' >> ~/.profile
echo -e 'if command -v pyenv 1>/dev/null 2>&1; then\n  eval "$(pyenv init -)"\nfi' >> ~/.profile
exec $SHELL -l
source ~/.profile

sudo apt -y update
sudo apt -y install --no-install-recommends make build-essential libssl-dev zlib1g-dev libbz2-dev libreadline-dev libsqlite3-dev wget curl llvm libncurses5-dev xz-utils tk-dev libxml2-dev libxmlsec1-dev libffi-dev liblzma-dev

pyenv rehash 
pyenv install -l

pyenv install -l | grep 3.10

pyenv install 3.10.5

pyenv shell 3.10.5
python -m pip install -U pip setuptools

echo 'pyenv shell 3.10.5' >> ~/.bashrc
exec $SHELL -l

pyenv shell 3.10.5
python -m pip install -U pip setuptools
rm -rf ~/py310
python -m venv ~/py310

source ~/py310/bin/activate
python -m pip install -U pip setuptools
exit

source ~/py310/bin/activate
python -m pip install -U jupyterlab jupyter jupyter-console jupytext nteract_on_jupyter spyder

python -m pip install -U numpy matplotlib

import numpy as np
%matplotlib inline
import matplotlib.pyplot as plt
import warnings
warnings.filterwarnings('ignore')   # Suppress Matplotlib warnings

x = np.linspace(0, 6, 100)
plt.style.use('default')
plt.plot(x, np.sin(x))

import numpy as np
%matplotlib inline
import matplotlib.pyplot as plt
import warnings
warnings.filterwarnings('ignore')   # Suppress Matplotlib warnings

x = np.linspace(0, 6, 100)
plt.style.use('default')
plt.plot(x, np.sin(x))

source ~/py310/bin/activate
python -m pip install -U numpy

python
import numpy as np
print(np.sin(0))
exit()

source ~/py310/bin/activate
python -m pip uninstall -y tensorflow tensorflow-cpu tensorflow-gpu tensorflow-intel tensorflow-text tensorflow-estimator tf-models-official tf_slim tensorflow_datasets tensorflow-hub keras keras-tuner keras-visualizer
python -m pip install -U pip setuptools
sudo apt -y install libopencv-dev libopencv-core-dev python3-opencv
python -m pip install -U tensorflow==2.10.1 tf_slim tensorflow_datasets tensorflow-hub keras keras-tuner keras-visualizer
 numpy pillow pydot matplotlib seaborn pandas scipy scikit-learn scikit-learn-intelex opencv-python opencv-contrib-python
python -m pip install git+https://github.com/tensorflow/docs
python -m pip install git+https://github.com/tensorflow/examples.git
python -m pip install git+https://www.github.com/keras-team/keras-contrib.git

python -c "from tensorflow.python.client import device_lib; print(device_lib.list_local_devices())"

環境変数の名前
TF_FORCE_GPU_ALLOW_GROWTH
値
true

export TF_FORCE_GPU_ALLOW_GROWTH=true
echo 'export TF_FORCE_GPU_ALLOW_GROWTH=true' >> ${HOME}/.bashrc

python -m pip install -U h5py pillow

cd ＜画像を置いたディレクトリ＞
python

import h5py
from tensorflow.keras.preprocessing import image
from tensorflow.keras.applications.vgg16 import VGG16
from tensorflow.keras.applications.vgg16 import preprocess_input
import numpy as np

m = VGG16(weights='imagenet', include_top=False)

img_path = '10.png'
img = image.load_img(img_path, target_size=(299, 299))
x = image.img_to_array(img)
x = np.expand_dims(x, axis=0)
x = preprocess_input(x)

features = m.predict(x)
print(features)

import h5py
from tensorflow.keras.preprocessing import image
from tensorflow.keras.applications.inception_v3 import preprocess_input, decode_predictions, InceptionV3
import numpy as np

m = InceptionV3(weights='imagenet')

img_path = '10.png'
img = image.load_img(img_path, target_size=(299, 299))
x = image.img_to_array(img)
x = np.expand_dims(x, axis=0)
x = preprocess_input(x)

preds = m.predict(x)

print('Predicted:')
for p in decode_predictions(preds, top=5)[0]:
    print("Score {}, Label {}".format(p[2], p[1]))

sudo apt -y update
sudo apt -y install libmecab-dev
source ~/py310/bin/activate
python -m pip install -U pip setuptools
sudo apt -y install libgeographic-dev gdal-bin gdal-data libgdal-dev
python -m pip install -U  numpy scipy h5py scikit-learn scikit-learn-intelex scikit-image seaborn pandas pillow pytest cython bokeh statsmodels plotly sympy csvkit docopt pyproj flake8 protobuf bs4 html5lib rope wrapt cffi wheel six sphinx bottleneck pygments numexpr xlrd xlsxwriter lxml graphviz pydot flask django redis pylint bz2file PyOpenGL    msgpack mecab ggplot matplotlib-venn pyglet pygame cocos2d bottle rtree shapely fiona geopandas geopy geographiclib requests \
pandasql pyyaml bokeh pymc3 mkl mkl-include holoviews pandas-bokeh ggplot prettyplotlib pybrain3 firebase-admin googletrans google-cloud-vision gpyocr azure-cognitiveservices-vision-computervision gensim gloo scikit-video scikits.datasmooth scikits.example scikits.fitting scikits.optimization scikits.vectorplot zodb gdata pyr2 pycaret
python -m pip install -U  gdal

python -m pip install git+https://github.com/jrosebr1/imutils.git
python -c "import imutils; print(imutils.__version__)"
python -m pip install git+https://github.com/DinoTools/python-overpy.git
python -c "import overpy; print(overpy.__version__)"
python -m pip install git+https://github.com/ianare/exif-py.git
python -c "import exifread; print(exifread.__version__)"
python -m pip install git+https://github.com/mapado/haversine.git
python -m pip install git+https://github.com/Turbo87/utm.git

python -m pip install pyproj rtree shapely fiona geopandas
python -m pip install gdal
python -m pip install -q git+https://github.com/python-visualization/folium.git

sudo apt -y update
sudo apt -y install libopenblas-dev liblapack-dev

cd /tmp
wget -O - https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS-2019.PUB | sudo apt-key add -
sudo wget https://apt.repos.intel.com/setup/intelproducts.list -O /etc/apt/sources.list.d/intelproducts.list
sudo apt -y update
sudo apt install intel-mkl-64bit intel-ipp-64bit intel-tbb intel-daal-64bit intel-mpi

sudo apt -y update
sudo apt -y install intel-mkl-64bit-2020.4-912 intel-ipp-64bit-2020.3-912 intel-tbb-2020.2-102 intel-daal-64bit-2020.3-912 intel-mpi-2019.9-912

cd /tmp
rm -rf cupy
git clone https://github.com/cupy/cupy.git
cd cupy
git submodule update --init
sudo CUDA_PATH="/usr/local/cuda" CFLAGS="-I/usr/local/cuda/include" LDFLAGS="-L/usr/local/cuda/lib64" pip3 -v install .

sudo apt -y update
sudo apt -y install libdlib-data libdlib-dev
sudo apt -y install libdlib19
sudo apt -y install liblapack-dev libblas-dev

#include<dlib/image_processing/frontal_face_detector.h>
#include<dlib/image_io.h>
#include<iostream>

using namespace dlib;
using namespace std;

int main(int argc, char** argv)
{  
  frontal_face_detector detector = get_frontal_face_detector();
  array2d<unsigned char> img;
  load_image(img, argv[1]);
  pyramid_up(img);
  std::vector<rectangle> dets = detector(img);
  std::vector<rectangle>::iterator it;
  for( it = dets.begin(); it != dets.end(); it++ )
    cout << *it << endl; 
}

g++ -o a.out a.cpp -ldlib -llapack -lblas

./a.out /usr/share/doc/libdlib19/examples/faces/2007_007763.jpg

cd /tmp
sudo rm -rf dlib
sudo git clone https://github.com/davisking/dlib
sudo chown -R $USER dlib
#
cd /tmp/dlib
CUDA_PATH="/usr/local/cuda" CFLAGS="-I/usr/local/cuda/include" LDFLAGS="-L/usr/local/cuda/lib64" \
sudo python3 setup.py build
CUDA_PATH="/usr/local/cuda" CFLAGS="-I/usr/local/cuda/include" LDFLAGS="-L/usr/local/cuda/lib64" \
sudo python3 setup.py install  
cd /tmp/dlib
sudo rm -f /tmp/dlib.tar
sudo tar -cpf /tmp/dlib.tar ./python_examples  ./tools
cd /usr/share/doc/libdlib19
sudo tar -xpf /tmp/dlib.tar

python3 -c "import dlib;print(dlib.__version__)"

cd /usr/share/dlib
sudo curl -O http://dlib.net/files/mmod_human_face_detector.dat.bz2
sudo curl -O http://dlib.net/files/dlib_face_recognition_resnet_model_v1.dat.bz2
sudo curl -O http://dlib.net/files/shape_predictor_5_face_landmarks.dat.bz2
sudo curl -O http://dlib.net/files/shape_predictor_68_face_landmarks.dat.bz2
sudo bzip2 -d mmod_human_face_detector.dat.bz2
sudo bzip2 -d dlib_face_recognition_resnet_model_v1.dat.bz2
sudo bzip2 -d shape_predictor_5_face_landmarks.dat.bz2
sudo bzip2 -d shape_predictor_68_face_landmarks.dat.bz2

sudo rm -rf /tmp/dlib.tar /tmp/tools
cd /usr/share/doc/libdlib19
tar -cpf /tmp/dlib.tar ./tools
cd /tmp
tar -xpf /tmp/dlib.tar 
sudo chown -R $USER tools

#
cd /tmp
cd tools/htmlify
sudo rm -rf build
mkdir build
cd build
cmake ..
cmake --build . --config RELEASE 
sudo make install

cd /tmp
cd tools/imglab
sudo rm -rf build
mkdir build
cd build
cmake ..
cmake --build . --config RELEASE 
sudo make install

cd /tmp
cd examples
sudo rm -rf build
mkdir build
cd build
cmake ..
cmake --build . --config RELEASE

cd /usr/local
sudo rm -rf face_recognition
sudo apt -y install python3-click python3-numpy python3-pillow python3-scipy
sudo git clone https://github.com/ageitgey/face_recognition
cd face_recognition
sudo python3 setup.py build
sudo python3 setup.py install

cd /usr/local
sudo rm -rf head-pose-estimation
sudo git clone https://github.com/lincolnhard/head-pose-estimation
cd head-pose-estimation
sudo curl -O http://dlib.net/files/shape_predictor_68_face_landmarks.dat.bz2  
sudo bzip2 -d shape_predictor_68_face_landmarks.dat.bz2

cd /usr/local
sudo rm -rf PupilTracker
sudo git clone https://github.com/TobiasRoeddiger/PupilTracker

sudo apt -y update
sudo apt -y install libopencv-dev libhdf5-dev libboost-dev libboost-filesystem-dev libboost-system-dev libboost-thread-dev libboost-regex-dev libatlas-base-dev libprotobuf-dev protobuf-compiler protobuf-c-compiler libgoogle-glog-dev libleveldb-dev liblmdb-dev 
sudo rm -rf /usr/local/openpose
sudo mkdir /usr/local/openpose
sudo chmod 755 /usr/local/openpose
sudo chown -R ${USER} /usr/local/openpose
cd /usr/local
sudo git clone --recursive https://github.com/CMU-Perceptual-Computing-Lab/openpose
sudo chown -R ${USER} /usr/local/openpose
cd /usr/local/openpose
sudo rm -f CMakeCache.txt
CUDA_PATH="/usr/local/cuda" CFLAGS="-I/usr/local/cuda/include -I/opt/intel/compilers_and_libraries/linux/mkl/include" LDFLAGS="-L/usr/local/cuda/lib64" \
  cmake -DDOWNLOAD_BODY_COCO_MODEL=ON \
  -DBUILD_PYTHON=ON \
  -DBUILD_EXAMPLES=ON \
  -DINSTRUCTION_SET=AVX2 \
  -DUSE_MKL=ON \
  -DBUILD_CAFFE=ON \
  -DBUILD_PYTHON=ON \
  -DGPU_MODE=CUDA \
  -DCUDNN_INCLUDE=/usr/local/cuda/include \
  -DCUDNN_LIBRARY=/usr/lib/x86_64-linux-gnu .
  CUDA_PATH="/usr/local/cuda" CFLAGS="-I/usr/local/cuda/include -I/opt/intel/compilers_and_libraries/linux/mkl/include" LDFLAGS="-L/usr/local/cuda/lib64" sudo make -k 
sudo make -k install

cd /usr/local/openpose/models
sudo bash /usr/local/openpose/models/getModels.sh

cd /usr/local/openpose
./examples/openpose/openpose.bin --video ./examples/media/video.avi

cd /usr/local/openpose
sudo make -k install
cd /usr/local/openpose/examples
sudo chmod 755 */*.bin
sudo cp */*.bin /usr/local/bin/
sudo /sbin/ldconfig

cd /usr/local
rm -rf alpr_jp
sudo git clone https://github.com/dyama/alpr_jp

sudo pip3 install git+https://github.com/ipazc/mtcnn.git
python3 -c "import mtcnn; print(mtcnn.__version__)"

sudo apt -y update
sudo apt -y install python3-skimage cython3
sudo pip3 install git+https://github.com/philferriere/cocoapi.git#subdirectory=PythonAPI
cd /usr/local
sudo git clone --recursive https://github.com/matterport/Mask_RCNN
cd Mask_RCNN
cat requirements.txt
sudo apt -y install python3-numpy python3-scipy python3-pil cython3 python3-matplotlib python3-skimage python3-h5py python3-ipython
sudp apt -y install libopencv-dev libopencv-core-dev python3-opencv libopencv-contrib-dev opencv-data
sudo pip3 install -U tensorflow keras imgaug 
sudo python3 setup.py build
sudo python3 setup.py install

cd /usr/local
sudo rm -rf muzero-general
sudo git clone https://github.com/werner-duvaud/muzero-general.git
cd muzero-general
sudo apt -y install python3-pil python3-aiohttp python3-aiohttp-cors python3-aioredis python3-async-timeout python3-blessings python3-filelock python3-hiredis python3-u-msgpack python3-multidict python3-pyglet python3-redis python3-yarl
sudo pip3 install -r requirements.txt

cd /usr/local/muzero-general
python3 muzero.py
tensorboard --logdir ./results

cd /usr/local
sudo rm -rf gym
sudo git clone https://github.com/openai/gym.git
cd gym
sudo pip3 install -e .
sudo apt -y install libglu1-mesa-dev libgl1-mesa-dev libosmesa6-dev xvfb ffmpeg curl patchelf libglfw3 libglfw3-dev cmake zlib1g zlib1g-dev swig

sudo apt -y update
sudo apt -y install geany geany-plugins

wget -qO - https://download.sublimetext.com/sublimehq-pub.gpg | sudo apt-key add -
sudo apt -y install apt-transport-https
echo "deb https://download.sublimetext.com/ apt/stable/" | sudo tee /etc/apt/sources.list.d/sublime-text.list
sudo apt -y update
sudo apt -y install sublime-text

sudo dpkg -i ./code_1.*_amd64.deb

public class HelloWorld
{
    public static void main(String args[])
    {
        System.out.println("Hello Java World !");
    }
}

javac HelloWorld.java
java HelloWorld

sudo apt -y update
sudo apt -y install emacs emacs-mozc mozc-data mozc-utils-gui

/usr/lib/mozc/mozc_tool --mode=config_dialog

(require 'mozc)
(load-library "mozc")
(set-language-environment "Japanese")
(setq default-input-method "japanese-mozc")
(global-set-key [zenkaku-hankaku] 'toggle-input-method)
(prefer-coding-system 'utf-8)

;; キーバインド. CTRL + Z を無視．CTRL + H でバックスペース．
(global-unset-key "\C-z")
(keyboard-translate ?\C-h ?\C-?)

;; 表示を単純化（スタートアップメッセージなし．スクラッチは空．ツールバー無し，
;; スクロールバーなし）．，ベル無し．
(setq ring-bell-function 'ignore)
(setq inhibit-startup-message t)
(setq initial-scratch-message "") 
(tool-bar-mode -1)
(menu-bar-mode 0)
(set-scroll-bar-mode nil)
(setq frame-title-format (format "%%f - Emacs@%s" (system-name)))

;; 行番号表示
(global-linum-mode t)
(column-number-mode t)

;; かっこの対応の表示に関する設定
;; (show-paren-mode t)
;; (setq show-paren-delay 0)
;; (setq show-paren-style 'expression)

;; 余計な空白を色付きで表示
(setq-default show-trailing-whitespace t)
(set-face-background 'trailing-whitespace "#b14770")

;; yes, no は，y, n で済むように
(fset 'yes-or-no-p 'y-or-n-p)

;; 履歴
(recentf-mode t)
(setq recentf-max-menu-items 30)
(setq recentf-max-saved-items 5000)

;; スクロールの量
(setq scroll-conservatively 35
      scroll-margin 0
      scroll-step 1)
(setq comint-scroll-show-maximum-output t)

;; タブ
(electric-indent-mode -1)
(setq-default indent-tabs-mode nil)
(custom-set-variables '(tab-width 4))

;; 補完
(when (require 'auto-complete-config nil t)
   (ac-config-default))
(setq text-mode-hook 'turn-off-auto-fill)

sudo apt -y update
sudo apt -y install firefox firefox-locale-ja

sudo apt -y update
sudo apt -y install chromium-browser chromium-browser-l10n

sudo apt -y update
sudo apt -y install filezilla

sudo apt -y update
sudo apt -y install xrdp

sudo apt -y update
sudo apt -y install mlocate

sudo apt -y update
sudo apt -y install catfish

sudo apt -y update
sudo apt -y install jq jsonlint

sudo apt -y update
sudo apt -y install pinta

sudo add-apt-repository -y -n ppa:sicklylife/ppa 
sudo apt -y update 
sudo apt -y install libgoocanvas2-perl 
sudo add-apt-repository -y --remove ppa:sicklylife/ppa 
sudo add-apt-repository -y -n ppa:shutter/ppa
sudo apt -y update 
sudo apt -y install shutter

sudo apt -y update
sudo apt -y install graphviz libgraphviz-dev

sudo dpkg -i ./draw.io-amd64-13.9.9.deb
sudo apt -y install draw.io

sudo apt -y update
sudo apt -y install inotify-tools

sudo apt -y update
sudo apt -y install hardinfo

sudo apt -y update
sudo apt -y install netcat net-tools

sudo apt -y update
sudo apt -y install postgresql-12 postgresql-client-12 postgresql-client-common postgresql-common postgresql-contrib odbc-postgresql pgadmin3 postgresql-12-postgis-3 postgresql-server-dev-12 python3-psycopg2 default-jdk libpostgresql-jdbc-java postgresql-plpython3-12 libpq-dev

sudo pg_ctlcluster 12 main start
sudo pg_ctlcluster 12 main status

sudo -u postgres psql
\c
\q

sudo -u postgres psql
\l
\q

shared_buffers = 1GB
work_mem = 1GB
max_files_per_process = 1000
effective_cache_size = 4GB

wal_level = minimal
archive_mode = off
max_wal_senders = 0

random_page_cost = 1.1

sudo -u postgres psql
create table T (id integer, name text);
insert into T values(1, 'hello');
select * from T;
\q
exit

sudo -u postgres psql
\i hoge.sql
\q
exit

sudo -u postgres psql 
CREATE EXTENSION plpython3u;
SELECT * FROM pg_language;
\c
\q
exit

cd /tmp
sudo apt -y install default-jdk
curl -O https://dbeaver.io/files/dbeaver-ce_latest_amd64.deb
sudo dpkg -i dbeaver-ce_latest_amd64.deb

cd /tmp
curl -O https://www.sql-workbench.eu/Workbench-Build128-with-optional-libs.zip
cd /usr/local
sudo mkdir /usr/local/sqlworkbench
cd /usr/local/sqlworkbench
sudo unzip /tmp/Workbench-Build128-with-optional-libs.zip
sudo bash sqlworkbench.sh
cd /usr/local/bin
sudo rm -f sqlworkbench.sh
sudo ln -s /usr/local/sqlworkbench/sqlworkbench.sh .

sudo apt -y update
sudo apt -y install sqlite3

cd /tmp
curl -LO https://github.com/pawelsalawa/sqlitestudio/releases/download/3.3.3/sqlitestudio-3.3.3.tar.xz
xz -d sqlitestudio-3.3.3.tar.xz
cd /usr/local
sudo tar -xvof /tmp/sqlitestudio-3.3.3.tar
cd /usr/local/bin
sudo ln -s /opt/SQLiteStudio/sqlitestudio .
sudo ln -s /opt/SQLiteStudio/sqlitestudiocli .

sudo apt -y update
sudo apt -y install cloudera-manager-daemons cloudera-manager-agent cloudera-manager-server

sudo apt -y update
sudo apt -y install grass
sudo apt -y install gdal-bin gdal-data python3-gdal python3-geopandas libgdal-dev libgdal-dev pktools pktools-dev
sudo apt -y install postgis qgis postgresql-12-pgrouting osm2pgsql

sudo -u postgres createdb pgis
sudo -u postgres psql -d pgis
\c
create extension postgis;
create extension postgis_topology;
\q
exit

sudo apt -y update
sudo apt -y install mecab libmecab-dev mecab-utils mecab-jumandic-utf8 mecab-naist-jdic python3-mecab

sudo apt -y update
sudo apt -y install libeigen3-dev libprotobuf-dev protobuf-c-compiler
sudo pip3 install -U pyknp
cd /tmp
sudo curl -O https://github.com/ku-nlp/jumanpp/releases/download/v2.0.0-rc3/jumanpp-2.0.0-rc3.tar.xz
tar -xvJof jumanpp-2.0.0-rc3.tar.xz
cd jumanpp-2.0.0-rc3
mkdir build
cd build
rm CMakeCache.txt
cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/usr/local
make
sudo make install
echo 'こんにちは，今日は晴れです' | jumanpp

sudo apt -y update
sudo apt -y install imagemagick

sudo apt -y update
sudo apt -y install vlc

sudo apt -y update
sudo apt -y install openshot

sudo apt -y update
sudo apt -y install blender blender-data

sudo add-apt-repository -y ppa:makehuman-official/makehuman-community
sudo apt -y update
sudo apt -y install makehuman-community makehuman-community-blendertools

sudo apt -y update
sudo apt -y install meshlab

sudo apt -y update
sudo apt -y install qtbase5-dev qtdeclarative5-dev qt5-default qttools5-dev libqt5widgets5 libqwt-qt5-dev libqt5svg5-dev
cd /tmp
rm -f master.zip
sudo rm -rf CloudCompare-master
# sudo curl -O https://github.com/CloudCompare/CloudCompare/archive/master.zip
git clone --recursive https://github.com/CloudCompare/CloudCompare
cd CloudCompare
rm -rf build
mkdir build
cd build
cmake ..
cmake --build .
sudo make install

sudo apt -y update
sudo apt -y install libboost-all-dev libeigen3-dev libvtk9-dev libflann-dev
cd /usr/local
sudo rm -rf pcl-pcl-1.9.1
cd /tmp
curl -O -L https://github.com/PointCloudLibrary/pcl/archive/refs/tags/pcl-1.9.1.tar.gz
cd /usr/local
sudo tar -xvzof /tmp/pcl-1.9.1.tar.gz
sudo chown -R $USER pcl-pcl-1.9.1
cd pcl-pcl-1.9.1
mkdir build
cd build
cmake -DCMAKE_BUILD_TYPE=Release ..
make -j2
sudo make install

sudo apt -y update
sudo apt -y install openni2-utils libopenni2-dev
sudo apt -y install primesense-nite-nonfree
sudo apt -y install libpcl-dev

cd /tmp
sudo rm -rf opencv
git clone --recursive https://github.com/opencv/opencv.git
cd /usr/local
sudo rm -rf opencv_contrib
sudo git clone --recursive https://github.com/opencv/opencv_contrib.git
sudo apt -y install python3-dev pylint3 flake8 python3-flake8
cd /tmp
cd opencv
sudo rm -rf build
mkdir build
cd build
CUDA_PATH="/usr/local/cuda" CFLAGS="-I/usr/local/cuda/include" LDFLAGS="-L/usr/local/cuda/lib64" \
cmake -D CMAKE_BUILD_TYPE=RELEASE \
      -D CMAKE_INSTALL_PREFIX=/usr/local \
      -D OPENCV_EXTRA_MODULES_PATH=/usr/local/opencv_contrib/modules \
      -D OpenBLAS_INCLUDE_DIR=/usr/include/x86_64-linux-gnu \
      -D OpenBLAS_LIB=/usr/lib/x86_64-linux-gnu/libopenblas.so \
      -D INSTALL_TESTS=ON \
      -D INSTALL_C_EXAMPLES=ON \
      -D INSTALL_PYTHON_EXAMPLES=ON \
      -D WITH_PYTHON=ON \
      -D BUILD_opencv_python2=OFF \
      -D BUILD_opencv_python3=ON \
      -D PYTHON_DEFAULT_EXECUTABLE=python3 \
      -D BUILD_EXAMPLES=ON ..
CUDA_PATH="/usr/local/cuda" CFLAGS="-I/usr/local/cuda/include" LDFLAGS="-L/usr/local/cuda/lib64" \
    make -j4
sudo make install
export LD_LIBRARY_PATH=/usr/local/lib:${LD_LIBRARY_PATH}
echo 'export LD_LIBRARY_PATH=/usr/local/lib:${LD_LIBRARY_PATH}' >> ${HOME}/.bashrc
sudo /sbin/ldconfig

# ue4
cd /usr/local
sudo git clone --recursive https://github.com/EpicGames/UnrealEngine.git
# github username and password 
cd UnrealEngine
sudo ./Setup.sh
sudo ./GenerateProjectFiles.sh
sudo make
# UE4Editor で起動

cd /usr/local
sudo git clone --recursive https://github.com/EpicGames/BlenderTools.git
cd /usr/local
sudo git clone --recursive https://github.com/EpicGames/UGCExample.git

sudo apt -y update
sudo apt -y install default-jdk
sudo update-java-alternatives -l
sudo update-java-alternatives --jre -s java-1.11.0-openjdk-amd64
sudo update-java-alternatives --jre-headless -s java-1.11.0-openjdk-amd64
sudo update-alternatives  --config java
java -version

export JAVA_HOME=/usr/lib/jvm/java-1.11.0-openjdk-amd64
export PATH=/usr/lib/jvm/java-1.11.0-openjdk-amd64/bin:$PATH
export CLASSPATH=.:/usr/lib/jvm/java-1.11.0-openjdk-amd64/lib

sudo apt -y update
sudo apt -y install eclipse-titan

public class HelloWorld
{
    public static void main(String args[])
    {
        System.out.println("Hello Java World !");
    }
}

javac HelloWorld.java
java HelloWorld

cd /tmp
sudo curl -O https://www.greenfoot.org/download/files/Greenfoot-linux-361.deb
sudo dpkg -i Greenfoot-linux-361.deb

sudo apt -y update
sudo apt -y install libopenjfx-java openjfx
cd /tmp
sudo rm -f BlueJ-linux-422.deb
sudo curl -O http://www.bluej.org/download/files/BlueJ-linux-422.deb
sudo dpkg -i BlueJ-linux-422.deb

public class HelloWorld
{
    public static void main(String args[])
    {
        System.out.println("Hello Java World !");
    }
}

javac HelloWorld.java
java HelloWorld

export RELEASE=`lsb_release -sc`
gpg --keyserver hkp://keyserver.ubuntu.com:80 --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
gpg -a --export E298A3A825C0D65DFD57CBB651716619E084DAB9 | sudo apt-key add -
sudo add-apt-repository --yes "deb https://cloud.r-project.org/bin/linux/ubuntu ${RELEASE}-cran40/" 
sudo apt -y update
#
sudo apt -y install   r-base
sudo apt -y install   r-base-core
sudo apt -y install   r-base-dev
sudo apt -y install   r-recommended
sudo apt -y install   r-mathlib
sudo apt -y install   r-cran-boot
sudo apt -y install   r-cran-class
sudo apt -y install   r-cran-cluster
sudo apt -y install   r-cran-codetools
sudo apt -y install   r-cran-foreign
sudo apt -y install   r-cran-hmisc
sudo apt -y install   r-cran-kernsmooth
sudo apt -y install   r-cran-lattice
sudo apt -y install   r-cran-mass
sudo apt -y install   r-cran-matrix
sudo apt -y install   r-cran-mgcv
sudo apt -y install   r-cran-nlme
sudo apt -y install   r-cran-nnet
sudo apt -y install   r-cran-rcmdr
sudo apt -y install   r-cran-rpart
sudo apt -y install   r-cran-spatial
sudo apt -y install   r-cran-survival
sudo apt -y install   r-cran-vr
sudo apt -y install   r-cran-rodbc
sudo apt -y install littler 
sudo apt -y install libjpeg62
ls /usr/lib/R/

echo 'options(repos="http://cran.rstudio.com"); update.packages(checkBuilt=TRUE, ask=FALSE)' | sudo R --vanilla 
sudo rm /tmp/a.$$.r
echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r 
echo 'biocLite("EBImage") ' >> /tmp/a.$$.r 
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'install.packages("dplyr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla 
echo 'install.packages("plyr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla 
echo 'install.packages("dplyr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla 
echo 'install.packages("reshape2", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla 
echo 'install.packages("ggplot2", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla 
echo 'install.packages("knitr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla 
echo 'install.packages("sp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla 
echo 'install.packages("raster", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla 
sudo apt -y install gdal-bin
echo 'install.packages("rgdal", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla 
#

#
sudo apt -y install r-recommended rstudio
sudo apt -y install 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
cat /tmp/a.$$.r | sudo R --vanilla 
# EBImage
sudo rm /tmp/a.$$.r
echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r 
echo 'biocLite("EBImage") ' >> /tmp/a.$$.r 
cat /tmp/a.$$.r | sudo R --vanilla 
# dplyr
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("dplyr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# qvalue
sudo rm /tmp/a.$$.r
echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r 
echo 'biocLite("qvalue") ' >> /tmp/a.$$.r 
cat /tmp/a.$$.r | sudo R --vanilla 
# pam
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("pam", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# pca3d
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("pca3d", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# tm
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("tm", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# mmand
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("mmand", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# devtools
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("devtools", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# ctv
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("ctv", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# osmar
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("osmar", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# pi0
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("pi0", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# leaps
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("leaps", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# ifs 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("ifa", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# BMA
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("BMA", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# WriteXLS
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("WriteXLS", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# CHsharp
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("CHsharp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# brew
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("brew", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# data.table
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("data.table", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# pcaPP
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("pcaPP", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# fastICA
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("fastICA", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# zoo
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("zoo", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 

#
for i in Cluster Graphics MachineLearning Multivariate NaturalLanguageProcessing Robust Spatial SpatioTemporal TimeSeries; do 
  echo $i
  rm -f /tmp/a.$$.r 
  echo "options(repos=\"http://cran.rstudio.com\") " > /tmp/a.$$.r 
  echo "library(ctv); install.views(\"$i\", repos=\"http://cran.rstudio.com/\") " >> /tmp/a.$$.r
  cat /tmp/a.$$.r | sudo R --vanilla 
done 

# base
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("abind", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("boot", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("car", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("chron", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("cluster", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("codetools", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("colorspace", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("effects", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("foreign", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("lattice", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("lmtest", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("mgcv", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("multcomp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("mvtnorm", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("relimp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("rpart", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("sandwich", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("sm", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("spatial", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("strucchange", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("survival", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# additional 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("catspec", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("cluster", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("deldir", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("diagram", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("fields", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("fftw", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("gregmisc", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("igraph", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("nlme", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("nnclust", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("png", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("pixmap", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("pvclust", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("rgl", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("scatterplot3d", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("som", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 

echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("Hmisc", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("Rcmdr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("RcmdrPlugin.KMggplot2", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("RSQLite", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("CCA", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("KernSmooth", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("MASS", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("Matrix", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("Rcmdr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# more
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("ggplot2", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("xlsxjars", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("xlsx", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("shiny", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("chron", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("sqldf", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("plyr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("entropy", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("moments", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("spatstat", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("png", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("biOps", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("biOpsGUI", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("maptools", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("caTools", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
# echo 'install.packages("class", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
# cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("evd", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("its", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("mapproj", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("mnormt", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("sm", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("sp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("stabledist", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("timeSeries", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("tseries", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("bayesm", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("gdata", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("gmodels", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("rpart", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("Zelig", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("forecast", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 

#
sudo rm /tmp/a.$$.r
echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r 
echo 'biocLite("osmar") ' >> /tmp/a.$$.r 
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r 
echo 'biocLite("Rgraphviz") ' >> /tmp/a.$$.r 
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r 
echo 'biocLite("hypergraph") ' >> /tmp/a.$$.r 
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r 
echo 'biocLite("RBGL") ' >> /tmp/a.$$.r 
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r 
echo 'biocLite("GraphPart") ' >> /tmp/a.$$.r 
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("XML", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("gridExtra", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("gridSVG", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("png", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("jpeg", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("igraph", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("Rcpp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("RcppExamples", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("mvoutlier", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("randomForest", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("plyr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("reshape2", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("forecast", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("stringr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("lubridate", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("sqldf", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("ggplot2", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("party", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("gdm", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("survival", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("caTools", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("Epi", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("vcd", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("Rz", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("parallel", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("compiler", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("Imap", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("changepoint", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("gstat", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("sp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("rgeos", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("maptools", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("shapefiles", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("spsurvey", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("sp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("RColorBrewer", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("forecast", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("psych", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("xts", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("timeSeries", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("gregmisc", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("mclust", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("topmodel", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("insol", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("rJava", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("RWekajars", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("RWeka", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("Snowball", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("lsa", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
#
sudo rm /tmp/a.$$.r
echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r 
echo 'install.packages("stringdist", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# again 
echo 'options(repos="http://cran.rstudio.com")' > /tmp/a.$$.r 
echo 'update.packages(checkBuilt=TRUE, ask=FALSE, repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla 
# again and again
echo 'options(repos="http://cran.rstudio.com")' > /tmp/a.$$.r 
echo 'update.packages(checkBuilt=TRUE, ask=FALSE, repos="http://cran.rstudio.com/") ' >> /tmp/a.$$.r
cat /tmp/a.$$.r | sudo R --vanilla

sudo apt -yV install wesnoth-1.10-dw 
sudo apt -yV install  wesnoth libmikmod2 libsdl-mixer1.2 libsdl-net1.2 libsmpeg0 
sudo apt -yV install  wesnoth-1.10 wesnoth-1.10-aoi wesnoth-1.10-core wesnoth-1.10-data wesnoth-1.10-did wesnoth-1.10-dm wesnoth-1.10-ei wesnoth-1.10-httt wesnoth-1.10-l wesnoth-1.10-low wesnoth-1.10-music wesnoth-1.10-nr wesnoth-1.10-sof wesnoth-1.10-sotbe wesnoth-1.10-thot wesnoth-1.10-trow wesnoth-1.10-tsg wesnoth-1.10-ttb wesnoth-1.10-utbs 
sudo apt -yV install  wesnoth-1.10-data wesnoth-1.0-music
sudo apt -yV install  libphysfs1 trigger trigger-rally trigger-rally-data
sudo apt -yV install  libsdl-net1.2 scorched3d scorched3d-data
sudo apt -yV install  hedgewars hedgewars-data libmikmod2 libsdl-mixer1.2 libsdl-net1.2 libsmpeg0
sudo apt -yV install  openttd openttd-data openttd-opengfx openttd-openmsx timidity timidity-daemon
sudo apt -yV install  openttd-opensfx
sudo apt -yV install  libglee0d1 libphysfs1 warzone2100 warzone2100-data warzone2100-music
sudo apt -yV install  nexuiz nexuiz-data nexuiz-music nexuiz-textures
sudo apt -yV install  libode1 darkplaces 
sudo apt -yV install  frogatto frogatto-data libmikmod2 libsdl-mixer1.2 libsmpeg0 
sudo apt -yV install  fb-music-high frozen-bubble frozen-bubble-data libmikmod2 libsdl-gfx1.2-4 libsdl-mixer1.2 libsdl-net1.2 libsdl-pango1 libsdl-perl libsmpeg0
sudo apt -yV install gnome-games 
sudo apt -yV install gnome-games-common 
sudo apt -yV install gnome-games-extra-data 
sudo apt -yV install gnotski
sudo apt -yV install gnobots2
sudo apt -yV install swell-foop
sudo apt -yV install gnotravex
sudo apt -yV install glchess
sudo apt -yV install lightsoff
sudo apt -yV install gnect
sudo apt -yV install torcs
sudo apt -yV install torcs-data
sudo apt -yV install torcs-data-tracks
sudo apt -yV install pingus
sudo apt -yV install bouncy
sudo apt -yV install circuslinux
sudo apt -yV install defendguin
sudo apt -yV install fretsonfire
sudo apt -yV install supertuxkart-data
sudo apt -yV install supertuxkart
sudo apt -yV install tuxpuck
sudo apt -yV install tuxtype
sudo apt -yV install tuxtype-data
sudo apt -yV install cowsay
sudo apt -yV install extremetuxracer
sudo apt -yV install extremetuxracer-data
sudo apt -yV install extremetuxracer-extras
sudo apt -yV install magicor
sudo apt -yV install magicor-data
sudo apt -yV install qimo-games
sudo apt -yV install supertux
sudo apt -yV install supertux-data
sudo apt -yV install smc
sudo apt -yV install smc-data
sudo apt -yV install smc-music 
sudo mkdir /usr/share/games/smc/campaign 
sudo apt -yV install libphysfs1 
sudo apt -yV install tuxonice-userui
sudo apt -yV install tuxmath
sudo apt -yV install tuxpaint
sudo apt -yV install tuxpaint-data
sudo apt -yV install tuxpaint-stamps-default
sudo apt -yV install tuxpaint-plugins-default
sudo apt -yV install tuxguitar
sudo apt -yV install redeclipse
sudo apt -yV install redeclipse-data
sudo apt -yV install kturtle
sudo apt -yV install parley
sudo apt -yV install kwordquiz
sudo apt -yV install supertaxkart
sudo apt -yV install quadrapassel
sudo apt -yV install gbrainy
sudo apt -yV install adonthell adonthell-data
sudo apt -yV install laby
sudo apt -yV install gnome-chess
sudo apt -yV install khangman
sudo apt -yV install blinken
sudo apt -yV install gnomine
sudo apt -yV install atomix
sudo apt -yV install atomix-data
sudo apt -yV install sudoku
sudo apt -yV install gnome-sudoku
sudo apt -yV install kanagram
sudo apt -yV install tuxpaint
sudo apt -yV install ri-li
sudo apt -yV install ri-li-data
sudo apt -yV install gamine
sudo apt -yV install gamine-data
sudo apt -yV install aisleriot
sudo apt -yV install fretsonfire
sudo apt -yV install fretsonfire-game
sudo apt -yV install fretsonfire-songs-sectoid
sudo apt -yV install fretsonfire-songs-muldjord
sudo apt -yV install iagno
sudo apt -yV install gnibbles
sudo apt -yV install ktuberling
sudo apt -yV install grobots2
sudo apt -yV install gtali
sudo apt -yV install glines
sudo apt -yV install ghotski
sudo apt -yV install childsplay
sudo apt -yV install gnome-mahjongg
sudo apt -yV install numptyphysics
sudo apt -yV install libatlas-test
sudo apt -yV install blikken 
sudo apt -yV install desktop-profiles
sudo apt -yV install freemind freemind-doc 
sudo apt -yV install gamine gamine-data
sudo apt -yV install geogebra
sudo apt -yV install javahelp2 
sudo apt -yV install kbruch
sudo apt -yV install mathpiper
sudo apt -yV install melting 
sudo apt -yV install simplyhtml
sudo apt -yV install gcompris gcompris-data gcompris-sound-en 
sudo apt -yV install yorick yorick-data yorick-z 
sudo apt -yV install celestia-gnome
sudo apt -yV install stellarium
sudo apt -yV install stellarium-data
sudo apt -yV install celestia-common
sudo apt -yV install celestia-gnome
sudo apt -yV install libmarblewidget11
#
sudo apt -yV install  ri-li
sudo apt -yV install  ri-li-data 
sudo apt -yV install  gcompris
sudo apt -yV install  gcompris-data 
sudo apt -yV install  tuxpaint-stamps-default 
sudo apt -yV install  blinken 
sudo apt -yV install  gbrainy
sudo apt -yV install  kanagram
sudo apt -yV install  kanagram-dbg 
sudo apt -yV install  khangman
sudo apt -yV install  gnome-mines 
sudo apt -yV install  gnomine 
sudo apt -yV install  ktuberling

Ubuntu のセットアップ（Ubuntu のインストールと設定，アプリケーションソフトウェアのインストール及び設定手順）

1. Ubuntu 22.04 のインストール

2. Ubuntu 22.04 の設定

2.1 OS のシステム更新

2.2 Ubuntu インストール直後のおすすめ設定

2.3 エディタのインストール

2.4 OpenSSH サーバー

3. C/C++ コンパイラー，make，パッケージツールのインストール（Ubuntu 上）

4. NVIDIA ドライバ，NVIDIA CUDA ツールキット 11.8, NVIDIA cuDNN 8 のインストール（Ubuntu 上）

GPU

NVIDIA ドライバ

NVIDIA CUDA ツールキット

NVIDIA cuDNN

NVIDIA cuDNN のインストール時の注意点

4.1 NVIDIA ドライバ，NVIDIA CUDA ツールキット, NVIDIA cuDNN のインストールの要点と注意点

4.2 NVIDIA ドライバのインストール

4.3 NVIDIA CUDA ツールキット11.8 のインストール

4.4 NVIDIA cuDNN のインストール

Ubuntu 22.04, Ubuntu 20.04 の場合

Ubuntu 18.04 の場合

4.5 nvcc の動作確認

5. Git, cmake, curl, wget, p7zip-full のインストール（Ubuntu 上）

6. Python3 開発用ファイル，pip, setuptools, venv のインストール，Python 開発環境，Python コンソール（Jupyter Qt Console, Jupyter ノートブック (Jupyter Notebook), Jupyter Lab, Nteract, spyder）のインストール（Ubuntu 上）

6.1 Python3 開発用ファイル，pip, setuptools, venv のインストール

6.2 Python 開発環境（JupyterLab, spyder, nteract）

6.3 numpy, scikit-learn のインストール

6.4 Python の数値演算等の性能確認

7. TensorFlow 2.11，Keras，MatplotLib, Python 用 opencv-python のインストール（Ubuntu 上）

7.1 TensorFlow 2.11，Keras，MatplotLib, Python 用 opencv-python のインストール

7.2 TensorFlow, Keras, VGG 16, InceptionV3, Imagenet による画像分類を試してみる

8. PyTorch, Torchvision のインストール（Ubuntu 上）

6.8 Chainer

6.9 Python の種々のパッケージ

9. 隔離された Python 3.10 環境（Ubuntu のシステム Python とは隔離）

7.1 pyenv のインストール

7.2 システム Python とは別に Python 3.10 をインストール （pyenv を使用）

7.3 隔離された Python 3.10 仮想環境の作成（venv を使用）と設定

7.4 Python 開発環境（JupyterLab, spyder, nteract）

7.4 numpy のインストール

7.5 TensorFlow 2.11, Keras 2.6.0, MatplotLib 3.1.2, Python 用 opencv-python 4.5.3 のインストール

7.6 TensorFlow, Keras, VGG 16, InceptionV3, Imagenet による画像分類を試してみる

7.8 Python の種々のパッケージ

10. 数値演算ライブラリ

10.1 OpenBLAS, LAPACK

8.2 Intel MKL, IPP, TBB, DALL, MPI（Performance ライブラリ）

11.2 CuPy

12. ディープラーニング応用

12.1 dlib, face_recognition（顔検出，顔のアラインメント，顔のランドマーク，顔認識その他）

12.2 head-pose-estimation （顔の向きの推定）

12.3 pupil tracker （眼球の向きの推定）

12.4 OpenPose （人体の姿勢推定，指のポーズ推定），Caffe

12.5 Tesseract OCR 5

12.6 Github dyama/alpr_jp

12.7 ipazc/mtcnn

12.8 matterplot/masked_rcnn （画像のセグメンテーション）

12.9 Meshroom（写真測量，フォトグラメトリ）

12.10 muZero

12.11 OpenAIGym

13. エディタ

13.1 Geany

13.2 Sublime Text

13.3 Visual Studio Code （エディタ）

13.4 Visual Studio Code の拡張機能

13.5 emacs

14. Web ブラウザ，リモートファイル転送，リモート接続 （Ubuntu 上）

14.1 Firefox

14.2 Chromium

14.3 FileZilla

14.4 xrdp

15. ツール類（作図、ファイル検索など） （Ubuntu 上）

15.1 mlocate （ファイル検索）

15.2 catfish （ファイル検索）

15.3 jq (JSON整形), jsonlint (JSONチェッカ)

15.4 Pinta （ドロー）

15.5 Shutter （スクリーンショット）（書きかけ）

15.6 GraphViz （作図ツールとライブラリ）

15.7 draw.io （作図ツール）

15.8 PlotDigitizer

15.9 inotify-tools （ファイル更新監視）

15.10 hardinfo （ハードウェア情報）

7.2 システム Python とは別に Python 3.10 をインストール（pyenv を使用）

14. Web ブラウザ，リモートファイル転送，リモート接続（Ubuntu 上）

15. ツール類（作図、ファイル検索など）（Ubuntu 上）