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Raspbian で基本ソフトウェア類のインストール
サイト内の関連 Web ページ:
- 「Raspberry Pi Desktop (for PC and Mac) のインストール」については，別のウェブページで説明している．
- 「Raspberry Pi Desktop (for PC and Mac)のおすすめ初期設定」については，別のウェブページで説明している．
- おすすめソフトウェア（Python，人工知能，プログラミング，データ処理，データベース，3次元データ，コンピュータビジョン，顔識別．顔認識，姿勢識別，3次元ゲームエンジン）を簡単インストール（Ubuntu 18.04
先人に感謝
Raspbian での留意事項
- OpenJDK 8 に起因するエラーメッセージを回避するために，次のコマンドを実行する
* エラーを避けるために、同じコマンドを２回実行
sudo apt -y purge openjdk-8-jre-headless sudo apt -y install openjdk-8-jre-headless sudo apt -y install openjdk-8-jre sudo apt -y install openjdk-8-jdk # sudo apt -y purge openjdk-8-jre-headless sudo apt -y install openjdk-8-jre-headless sudo apt -y install openjdk-8-jre sudo apt -y install openjdk-8-jdk
- fcitk-data のインストールでエラーが出た (2018.7) のでインストールしない
- TensorFlow 0.11 のために次のパッケージをインストールする
protobuf==3.0.0, bleach==1.5.0, html5lib==0.999999999, filelock
- conda を使いたいので，Rasbpian 版の miniconda である BerryConda をインストールする
pyenv との共存が面倒そうなので，pyenv はインストールしない
前準備
Raspbian のシステム更新などを終わっておくこと
次のコマンドを実行．
sudo apt -y update
sudo apt -yV upgrade
sudo apt -yV dist-upgrade
sudo apt -yV autoremove
sudo apt autoclean
sudo shutdown -r now
ここでインストールする基本ソフトウェア
- プログラミング，開発環境： Chainer, TensorFlow, その他 python ツールやパッケージ (opencvなど),
OpenJDK 8, Java JDK 8, Apache Ant, Java 開発環境 BlueJ, Guava, Java 学習環境 Greenfoot, Java 開発環境 Eclipse, pleiades, gcc, g++, gdb, GDB Enhanced Features, R システム, R.Studio (R開発環境), R パッケージ, scratch2, GNU Octave 及び関連パッケージ, Node JS, npm, Android SDK - ツール： Git, git-hub (GitHub), CMake, cmake-gui, ImageMagick (画像), FFMpeg (ビデオデータ処理), p7zip (圧縮, 展開), Graphviz (グラフデータ構造可視化) net-tools, hwinfo (ハードウェア情報), gdal (地理情報)
- アクセサリ: xpdf (PDF リーダ), shutter (画面キャプチャ), catfish (ファイル検索)
- インターネット: FileZilla (ファイル転送), firefox (Webブラウザ), Wireshark (ネットワーク), netcat (通信), AWS Command Line Interface (AWS)
- エディタ: Emacs, leafpad
- グラフィックス，ペイント，画像: Blender (3次元), POV-ray, MeshLab, MakeHuman, Inkscape, GIMP, pinta, CloudCompare
- 地理情報: QGIS, Debian GIS Data, Debian GIS OSM
- ビデオ: VLC media player (メディア), Openshot
- データベース管理システム: SQLite 3, DB Browser for SQLite (sqlitebrowser), sqliteman, Redis 64bit
- ライブラリ: OpenBLAS(演算), OpenCV (コンピュータビジョン)，NVIDIA CUDA, OpenALPR, OpenNI, libPCL ,Guava, Dlib
- 設計: FreeCAD
- ゲームフレームワーク，ゲームエンジン panda3d
- Docker類
Docker, docker-compose
基本ソフトウェアのインストール手順
ソースコードからのビルドに有用なソフトウェアのインストール
sudo apt -y update
sudo apt -y install build-essential gcc g++ make libtool texinfo dpkg-dev pkg-config python3-dev python3-pip python3-numpy python-dev python-pip python-numpy
sudo apt -y install git make cmake cmake-curses-gui autoconf automake flex bison clang binutils swig curl
sudo apt -y install subversion ccache
sudo apt -y install zip unzip
sudo apt -y install libopenblas-dev liblapack-dev libtbb-dev nvidia-cuda-dev
# sudo apt -y install nvidia-cuda-toolkit
sudo apt -y install libxi-dev libsndfile1-dev libopenexr-dev libalut-dev libsdl2-dev libavdevice-dev libavformat-dev libavutil-dev libavcodec-dev libswscale-dev libx264-dev libxvidcore-dev libmp3lame-dev libspnav-dev libglu1-mesa-dev libv4l-dev
sudo apt -y install libbz2-dev libsqlite3-dev libssl-dev libreadline-dev libpng-dev libtiff-dev zlib1g-dev libx11-dev libgl1-mesa-dev libxrandr-dev libxxf86dga-dev libxcursor-dev libfreetype6-dev libvorbis-dev libeigen3-dev libopenal-dev libode-dev libbullet-dev libgtk2.0-dev
# sudo apt -y install libjasper-dev
sudo apt -y install libgtk-3-dev libatlas-base-dev gfortran python2.7-dev python3-dev
sudo apt -y install nvidia-cg-toolkit
# jpeg はソースコードからビルドする
sudo apt -y install libjpeg62-turbo-dev
cd /tmp
wget http://www.ijg.org/files/jpegsrc.v9c.tar.gz
tar -xvzof jpegsrc.v9c.tar.gz
cd jpeg-9c
./configure
make
sudo make install
# OpenJDK 8
sudo apt purge openjdk-8-jre-headless
sudo apt install openjdk-8-jre-headless
sudo apt install openjdk-8-jre
sudo apt install openjdk-8-jdk
#エラーを避けるために、同じコマンドを２回実行
sudo apt purge openjdk-8-jre-headless
sudo apt -y install openjdk-8-jre-headless
sudo apt -y install openjdk-8-jre
sudo apt -y install openjdk-8-jdk
Raspbian での環境整備
プログラミング，開発環境
- virtualenv, virtualenv-wrapper
cd /tmp sudo rm -f get-pip.py curl -O https://bootstrap.pypa.io/get-pip.py sudo /usr/bin/python3 get-pip.py sudo /usr/bin/python get-pip.py # sudo rm -rf $HOME/.virtualenvs sudo rm -rf ~/.cache/pip sudo pip install virtualenv virtualenv-wrapper sudo pip3 install virtualenv virtualenv-wrapper export WORKON_HOME=$HOME/.virtualenvs export VIRTUALENVWRAPPER_PYTHON=/usr/bin/python3 source /usr/local/bin/virtualenv-wrapper.sh touch ~/.bashrc echo -e "\n# virtualenv and virtualenv-wrapper" >> ~/.bashrc echo "export WORKON_HOME=$HOME/.virtualenvs" >> ~/.bashrc echo "export VIRTUALENVWRAPPER_PYTHON=/usr/bin/python3" >> ~/.bashrc echo "source /usr/local/bin/virtualenv-wrapper.sh" >> ~/.bashrc source ~/.bashrc
- Python 3 環境と、Chainer, TensorFlow その他，python パッケージ
source /usr/local/bin/virtualenv-wrapper.sh mkvirtualenv --python=/usr/bin/python3 py36 lsvirtualenv source /usr/local/bin/virtualenv-wrapper.sh workon py35 cd /tmp sudo rm -f get-pip.py curl -O https://bootstrap.pypa.io/get-pip.py ~/.virtualenvs/py35/bin/python3 get-pip.py sudo apt -y install caffe-cpu sudo apt -y install idle-python3.5 sudo apt -y install ipython3 sudo apt -y install ipython3-qtconsole sudo apt -y install jupyter-nbextension-jupyter-js-widgets sudo apt -y install libpython3-all-dev sudo apt -y install python3-bleach sudo apt -y install python3-bz2file sudo apt -y install python3-django sudo apt -y install python3-flask sudo apt -y install python3-gdal sudo apt -y install python3-geopandas sudo apt -y install python3-h5py sudo apt -y install python3-hdf5storage sudo apt -y install python3-html5lib sudo apt -y install python3-ipykernel sudo apt -y install python3-ipython sudo apt -y install python3-ipython-genutils sudo apt -y install python3-matplotlib sudo apt -y install python3-msgpack sudo apt -y install python3-numpy sudo apt -y install python3-overpy sudo apt -y install python3-pandas sudo apt -y install python3-protobuf sudo apt -y install python3-psutil sudo apt -y install python3-pydot sudo apt -y install python3-pygame sudo apt -y install python3-pygraphviz sudo apt -y install python3-pylint-common sudo apt -y install python3-pyproj sudo apt -y install python3-redis sudo apt -y install python3-scipy sudo apt -y install python3-seaborn sudo apt -y install python3-six sudo apt -y install python3-skimage sudo apt -y install python3-skimage-lib sudo apt -y install python3-sklearn sudo apt -y install python3-sklearn-lib sudo apt -y install python3-sklearn-pandas sudo apt -y install python3-sympy sudo apt -y install python3-yaml # instring using pip3 pip install --ignore-installed altair pip install --ignore-installed distributed pip install --ignore-installed pillow pip install --ignore-installed sqlite pip install --ignore-installed gensim pip install --ignore-installed cython # pip install --ignore-installed opencv pip install --ignore-installed cocos2d pip install git+https://github.com/davisking/dlib pip install git+https://github.com/ageitgey/face_recognition pip install git+https://github.com/jrosebr1/imutils pip install --ignore-installed --upgrade tensorflow pip install git+https://github.com/keras-team/keras pip install --ignore-installed --upgrade pyglet pip install --ignore-installed --upgrade cocos2d pip install git+https://github.com/python-visualization/folium pip install --ignore-installed --upgrade exifread pip install --ignore-installed --upgrade haversine pip install --ignore-installed --upgrade utm
- Python 3 環境に spyder 開発版 のインストール
sudo apt -y update sudo apt -y install python3-qtpy sudo apt -y install python3-spyder pip install --ignore-installed --upgrade spyder_kernels pip install --ignore-installed --upgrade pycodestyle pip install --ignore-installed --upgrade rope pip install --ignore-installed --upgrade jedi cd /tmp git clone https://github.com/spyder-ide/spyder.git cd spyder git pull ~/.virtualenvs/py35/bin/python3 bootstrap.py ~/.virtualenvs/py35/bin/python3 setup.py install
- raspbian に picamera
pip3 install --ignore-installed --upgrade picamera
- python 2 の環境と いくつかの python パッケージ
source /usr/local/bin/virtualenv-wrapper.sh workon py27 cd /tmp sudo rm -f get-pip.py curl -O https://bootstrap.pypa.io/get-pip.py ~/.virtualenvs/py27/bin/python get-pip.py # pip install numpy pip install PyOpenGL
- OpenJDK 8, Apache Ant, Java 開発環境 BlueJ, Guava, Java 学習環境 Greenfoot,
Java 開発環境 Eclipse, pleiades
cd /tmp # sudo apt -y install oracle-java8-jdk sudo apt -y install ant sudo apt -y install bluej sudo apt -y install libguava-java sudo apt -y install greenfoot sudo apt -y install eclipse pleiades echo "-javaagent:/usr/share/eclipse/plugins/jp.sourceforge.mergedoc.pleiades/pleiades.jar " | sudo tee -a /usr/lib/eclipse/eclipse.ini java -version
- gcc, g++, gdb, GDB Enhanced Features, R システム, R.Studio (R開発環境), R パッケージ, scratch2, GNU Octave 及び関連パッケージ, Node JS, npm, Android SDK
cd /tmp sudo apt -y install build-essential sudo apt -y install g++ # GDB Enhanced Features, wget -q -O- https://github.com/hugsy/gef/raw/master/scripts/gef.sh | sh # sudo apt -y install libgstreamer1.0-0:amd64 libgstreamer-plugins-base1.0-0:amd64 sudo apt -y install r-base # echo 'options(repos="http://cran.rstudio.com"); update.packages(checkBuilt=TRUE, ask=FALSE)' | sudo R --vanilla sudo rm /tmp/a.$$.r echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r echo 'biocLite("EBImage") ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'install.packages("dplyr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla echo 'install.packages("plyr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla echo 'install.packages("dplyr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla echo 'install.packages("reshape2", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla echo 'install.packages("ggplot2", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla echo 'install.packages("knitr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla echo 'install.packages("sp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla echo 'install.packages("raster", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla sudo apt -y install gdal-bin echo 'install.packages("rgdal", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla # sudo apt -y install r-recommended # R.Studio は書きかけ sudo apt -y install gdebi-core sudo apt -y install libxi6:amd64 libqt5gui5:amd64 sudo apt -y install libgl1-glvnd-nvidia-glx:amd64 libxcomposite1:amd64 libicu-dev:amd64 libxml2-dev:amd64 libxslt-dev:amd64 sudo apt -y install rstudio sudo apt -y install scratch2 sudo apt -y install octave octave-* # nodejs and npm for debian linux curl -sL https://deb.nodesource.com/setup_10.x | sudo -E bash - sudo apt -y install -y nodejs sudo npm install -g n sudo apt -y install android-sdkツール
Git, git-hub (GitHub), CMake, cmake-gui, ImageMagick (画像), FFMpeg (ビデオデータ処理), p7zip (圧縮, 展開), Graphviz (グラフデータ構造可視化), net-tools, hwinfo (ハードウェア情報), gdal (地理情報), tesseract, jq (JSON整形), jsonlint (JSONチェッカ)
sudo apt -y update sudo apt -y install git sudo apt -y install git-hub sudo apt -y install cmake sudo apt -y install cmake-curses-gui sudo apt -y install cmake-gui sudo apt -y install imagemagick sudo apt -y install ffmpeg sudo apt -y install p7zip-full sudo apt -y install graphviz graphviz-dev sudo apt -y install net-tools sudo apt -y install hwinfo sudo apt -y install gdal-bin libgdal-dev sudo apt -y install tesseract-ocr tesseract-ocr-jpn libtesseract-dev libleptonica-dev tesseract-ocr-jpn sudo apt -y install jq sudo apt -y install jsonlint
アクセサリ
xpdf (PDF リーダ), shutter (画面キャプチャ), catfish (ファイル検索)
sudo apt -y update sudo apt -y install xpdf sudo apt -y install shutter sudo apt -y install libgoo-canvas-perl sudo apt -y install catfish
インターネット
FileZilla (ファイル転送), firefox (Webブラウザ), Wireshark (ネットワーク), netcat (通信), AWS Command Line Interface (AWS)
sudo apt -y update sudo apt -y install filezilla sudo apt -y install firefox-esr sudo apt -y install firefox-esr-l10n-ja sudo apt -y install wireshark sudo apt -y install netcat sudo apt -y install awscli aws-shell
エディタ
Emacs, leafpad, gedit
# emacs sudo apt -y install emacs # leafpad sudo apt -y install leafpad # gedit sudo apt -y install gedit gedit-plugins sudo apt -y install gedit-developer-plugins
グラフィックス
Blender (3次元), POV-ray, MeshLab, MakeHuman, Inkscape, GIMP, pinta, CloudCompare
sudo apt -y update sudo apt -y install blender sudo apt -y install povray povray-examples sudo apt -y install meshlab sudo apt -y install makehuman sudo apt -y install inkscape sudo apt -y install gimp sudo apt -y install pinta # CloudCompare sudo apt -y install qtbase5-dev qtdeclarative5-dev qt5-default qttools5-dev libqt5widgets5 libqwt-qt5-dev libqt5svg5-dev cd /tmp wget https://github.com/CloudCompare/CloudCompare/archive/master.zip unzip master.zip rm -f master.zip cd CloudCompare-master rm -rf build mkdir build cd build cmake .. cmake --build . sudo make install
地図情報
QGIS , Debian GIS Data, Debian GIS OSM
sudo apt -y update sudo apt -y install qgis
ビデオ
VLC media player (メディア), Openshot
sudo apt -y update sudo apt -y install vlc sudo apt -y install openshot
データベース
SQLite 3, DB Browser for SQLite (sqlitebrowser), sqliteman, Redis 64bit
sudo apt -y update sudo apt -y install sqlite3 sudo apt -y install sqlitebrowser sudo apt -y install redis-server redis-tools # sqliteman sudo apt -y install libqscintilla2-dev cd /tmp wget https://sourceforge.net/projects/sqliteman/files/sqliteman/1.2.2/sqliteman-1.2.2.tar.bz2 tar -xvjof sqliteman-1.2.2.tar.bz2 cd sqliteman-1.2.2 rm -rf build mkdir build cd build cmake .. cmake --build . sudo make install
ライブラリ
OpenCV (コンピュータビジョン)，NVIDIA CUDA, OpenALPR, OpenNI2, libPCL, Guava, Dlib
# sudo apt -y install nvidia-cuda-dev nvidia-cuda-doc nvidia-cuda-gdb # sudo apt -y install nvidia-cuda-toolkit sudo apt -y install openalpr openalpr-utils libopenalpr-dev sudo apt -y install openni2-utils libopenni2-dev sudo apt -y install libpcl-dev sudo apt -y install libguava-java # echo "CONF_SWAPSIZE=1024" | sudo tee -a /etc/dphys-swapfile sudo /etc/init.d/dphys-swapfile stop sudo /etc/init.d/dphys-swapfile start # source /usr/local/bin/virtualenv-wrapper.sh workon py35 pip install numpy cd /tmp rm -rf opencv rm -rf opencv_contrib git clone https://github.com/opencv/opencv.git git clone https://github.com/opencv/opencv_contrib.git sudo apt install python-dev python3-dev cd opencv rm -rf build mkdir build cd build cmake -D CMAKE_BUILD_TYPE=RELEASE \ -D CMAKE_INSTALL_PREFIX=/usr/local \ -D INSTALL_PYTHON_EXAMPLES=ON \ -D OPENCV_EXTRA_MODULES_PATH=/tmp/opencv_contrib/modules \ -D BUILD_opencv_python2=OFF \ -D BUILD_opencv_python3=ON \ -D PYTHON_DEFAULT_EXECUTABLE=python3 \ -D BUILD_EXAMPLES=ON .. make sudo make install sudo /sbin/ldconfig ipython << EOS import cv2 print(cv2.__version__) EOS rm -f ~/.virtualenvs/cv/lib/python3.6/site-packages/cv2.so ln -s /usr/local/lib/python3.6/site-packages/cv2-36m.so ~/.virtualenvs/cv/lib/python3.6/site-packages/cv2.so # fgrep -v "CONF_SWAPSIZE" /etc/dphys-swapfile > /tmp/1 sudo cp /etc/dphys-swapfile /etc/dphys-swapfile.$$ sudo cp /tmp/1 /etc/dphys-swapfile sudo /etc/init.d/dphys-swapfile stop sudo /etc/init.d/dphys-swapfile start
Dlib
source /usr/local/bin/virtualenv-wrapper.sh workon py35 cd /tmp wget http://dlib.net/files/dlib-19.15.zip unzip dlib-19.15.zip cd dlib-19.15 rm -rf build mkdir build cd build cmake .. cmake --build . sudo make install
設計
freecad
sudo apt -y update sudo apt -y install freecad
ゲームフレームワーク，ゲームエンジン
# Panda3d cd /tmp sudo rm -f master.zip wget https://github.com/panda3d/panda3d/archive/master.zip unzip master.zip rm -f master.zip cd panda3d-master sudo python makepanda/makepanda.py --everything --installer --no-egl --no-gles --no-gles2 --no-opencv sudo dpkg -i panda3d*.deb # pip install --pre --extra-index-url https://archive.panda3d.org/ panda3d
Docker類
Docker, docker-compose
sudo apt -y update sudo apt -y install docker sudo apt -y install docker-compose
R のパッケージを追加
cd /tmp sudo apt -y install libxml2-dev libfftw3-dev libfreetype6-dev sudo apt -y install libnlopt-dev echo 'options(repos="http://cran.rstudio.com"); update.packages(checkBuilt=TRUE, ask=FALSE)' | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # EBImage sudo rm /tmp/a.$$.r echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r echo 'biocLite("EBImage") ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # dplyr echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("dplyr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # qvalue sudo rm /tmp/a.$$.r echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r echo 'biocLite("qvalue") ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # pam echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("pam", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # pca3d echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("pca3d", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # tm echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("tm", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # mmand echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("mmand", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # devtools echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("devtools", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # ctv echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("ctv", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # osmar echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("osmar", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # pi0 echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("pi0", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # leaps echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("leaps", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # ifs echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("ifa", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # BMA echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("BMA", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # WriteXLS echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("WriteXLS", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # CHsharp echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("CHsharp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # brew echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("brew", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # data.table echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("data.table", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # pcaPP echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("pcaPP", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # fastICA echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("fastICA", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # zoo echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("zoo", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # base echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("abind", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("boot", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("car", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("chron", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("cluster", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("codetools", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("colorspace", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("effects", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("foreign", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("lattice", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("lmtest", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("mgcv", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("multcomp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("mvtnorm", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("relimp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("rpart", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("sandwich", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("sm", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("spatial", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("strucchange", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("survival", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # additional echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("catspec", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("cluster", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("deldir", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("diagram", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("fields", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("fftw", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("gregmisc", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("igraph", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("nlme", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("nnclust", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("png", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("pixmap", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("pvclust", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("rgl", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("scatterplot3d", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("som", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("Hmisc", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("Rcmdr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("RcmdrPlugin.KMggplot2", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("RSQLite", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("CCA", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("KernSmooth", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("MASS", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("Matrix", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("Rcmdr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # more echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("ggplot2", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("xlsxjars", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("xlsx", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("shiny", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("chron", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("sqldf", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("plyr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("entropy", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("moments", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("spatstat", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("png", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("biOps", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("biOpsGUI", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("maptools", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("caTools", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r # echo 'install.packages("class", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r # cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("evd", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("its", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("mapproj", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("mnormt", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("sm", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("sp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("stabledist", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("timeSeries", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("tseries", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("bayesm", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("gdata", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("gmodels", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("rpart", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("Zelig", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("forecast", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # again echo 'options(repos="http://cran.rstudio.com")' > /tmp/a.$$.r echo 'update.packages(checkBuilt=TRUE, ask=FALSE, repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r echo 'biocLite("osmar") ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r echo 'biocLite("Rgraphviz") ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r echo 'biocLite("hypergraph") ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r echo 'biocLite("RBGL") ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r echo 'biocLite("GraphPart") ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("XML", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("gridExtra", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("gridSVG", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("png", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("jpeg", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("igraph", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("Rcpp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("RcppExamples", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("mvoutlier", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("randomForest", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("plyr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("reshape2", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("forecast", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("stringr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("lubridate", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("sqldf", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("ggplot2", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("party", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("gdm", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("survival", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("caTools", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("Epi", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("vcd", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("Rz", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("parallel", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("compiler", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("Imap", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("changepoint", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("gstat", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("sp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("rgeos", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("maptools", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("shapefiles", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("spsurvey", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("sp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("RColorBrewer", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("forecast", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("psych", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("xts", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("timeSeries", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("gregmisc", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("mclust", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("topmodel", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("insol", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("rJava", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("RWekajars", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("RWeka", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("Snowball", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("lsa", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("stringdist", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # again echo 'options(repos="http://cran.rstudio.com")' > /tmp/a.$$.r echo 'update.packages(checkBuilt=TRUE, ask=FALSE, repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # again and again echo 'options(repos="http://cran.rstudio.com")' > /tmp/a.$$.r echo 'update.packages(checkBuilt=TRUE, ask=FALSE, repos="http://cran.rstudio.com/") ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla