Raspberry Pi Desktop (for PC and Mac) で基本ソフトウェア類のインストール
Raspberry Pi Desktop (for PC and Mac) は,Debian 9 ベース.軽量である. このページでは,基本ソフトウェア類のインストール手順について説明する.
サイト内の関連 Web ページなど:
- インストール手順は、「Raspberry Pi Desktop (for PC and Mac) のインストール」のページで説明している.
- 「Raspberry Pi Desktop (for PC and Mac)のおすすめ初期設定」については,別のウェブページで説明している.
先人に感謝
前準備
RaspDesktop のシステム更新などを行っておく
次のコマンドを実行.
sudo apt -y update sudo apt -yV upgrade sudo apt -yV dist-upgrade sudo rpi-update sudo apt -yV autoremove sudo apt autoclean sudo shutdown -r now
ここでインストールする基本ソフトウェア
- ツール: Git, git-hub (GitHub), CMake, cmake-gui, ImageMagick (画像), FFMpeg (ビデオデータ処理), p7zip (圧縮, 展開), Graphviz (グラフデータ構造可視化) net-tools, hwinfo (ハードウェア情報), gdal (地理情報)
- アクセサリ: xpdf (PDF リーダ), shutter (画面キャプチャ), catfish (ファイル検索)
xpdf shutter catfish ※ PDF ファイルは texlive のドキュメント Africa.pdf を使用
- インターネット: FileZilla (ファイル転送), firefox (Webブラウザ), Wireshark (ネットワーク), netcat (通信),
AWS Command Line Interface (AWS), RealVNCViewer (リモート接続)
filezilla firefox wireshark netcat - エディタ: Emacs, leafpad
Emacs - グラフィックス,ペイント,画像:
Blender (3次元), POV-ray, MeshLab, MakeHuman, Inkscape, GIMP, pinta, CloudCompare
Blender MeshLab MakeHuman Inkscape GIMP pinta ※ jpgファイルは OpenCV に付属の licenseplate_motion.jpg を使用
- 地理情報: QGIS
QGIS - ビデオ: VLC media player (メディア), Openshot
Openshot - データベース管理システム: SQLite 3, DB Browser for SQLite (sqlitebrowser), sqliteman, Redis 64bit
SQLite 3 sqlitebrowser sqliteman - プログラミング,開発環境: Chainer, TensorFlow, その他 python ツールやパッケージ (opencvなど),
Java JDK 8, Apache Ant, Java 開発環境 BlueJ, Guava, Java 学習環境 Greenfoot, Java 開発環境 Eclipse, pleiades, gcc, g++, gdb, R システム, R.Studio (R開発環境), R パッケージ, scratch2, GNU Octave 及び関連パッケージ, Node JS, npm Android SDK - ライブラリ: OpenBLAS(演算), OpenCV (コンピュータビジョン),NVIDIA CUDA, OpenALPR, OpenNI, libPCL , Guava, Dlib
- 設計: FreeCAD
- ゲームフレームワーク,ゲームエンジン panda3d
- Docker類
Docker, docker-compose
Raspberry Pi で Python の環境を整える
- システムの Python について, pip の更新
cd /tmp sudo rm -f get-pip.py curl -O https://bootstrap.pypa.io/get-pip.py sudo /usr/bin/python3 get-pip.py sudo /usr/bin/python get-pip.py
- virtualenv, virtualenv-wrapperのインストール
システムの Python とは前もって Python をインストールしておくことを作ることができるようにする
sudo rm -rf $HOME/.virtualenvs sudo rm -rf ~/.cache/pip sudo pip install virtualenv virtualenv-wrapper sudo pip3 install virtualenv virtualenv-wrapper export WORKON_HOME=$HOME/.virtualenvs export VIRTUALENVWRAPPER_PYTHON=/usr/bin/python3 source /usr/local/bin/virtualenv-wrapper.sh touch ~/.bashrc echo -e "\n# virtualenv and virtualenv-wrapper" >> ~/.bashrc echo "export WORKON_HOME=$HOME/.virtualenvs" >> ~/.bashrc echo "export VIRTUALENVWRAPPER_PYTHON=/usr/bin/python3" >> ~/.bashrc echo "source /usr/local/bin/virtualenv-wrapper.sh" >> ~/.bashrc source ~/.bashrc
- virtualenv を使って、隔離された Python 3 環境を作る
- 次の手順で作る
mkvirtualenv --python=/usr/bin/python3 py35 lsvirtualenv
- 次の手順で確認する
workon py35 pip list
- 次の手順で作る
virtualenv 配下の Python 3 環境 に TensorFlow 1.11, Keras 2.2.4 をインストール
RaspDesktop の TensorFlow は、pip でインストールできないので、ソースコードからビルドする.Keras もインストールする.
- virtualenv 配下の Python 3 環境で pip の更新
workon py35 cd /tmp sudo rm -f get-pip.py curl -O https://bootstrap.pypa.io/get-pip.py python get-pip.py pip list
- lib64stdc++6 のインストール
sudo apt -y update sudo apt -y install lib64stdc++6 sudo /sbin/ldconfig
- Bazel のインストール
Bazel は Tenforflow のビルドに使う
【関連する外部ページ】 https://www.quora.com/How-do-I-build-and-install-tensorflow-using-bazel-for-CPU-version
【関連する外部ページ】 https://github.com/samjabrahams/tensorflow-on-raspberry-pi/blob/master/GUIDE.md
wget https://github.com/bazelbuild/bazel/releases/download/0.17.2/bazel-0.17.2-installer-linux-x86_64.sh sudo bash bazel-0.17.2-installer-linux-x86_64.sh
- TensorFlow のソースコードのダウンロードと前準備 (かなりの時間がかかる)
【関連する外部ページ】 https://www.tensorflow.org/install/source
workon py35 pip install numpy cd /tmp rm -rf tensorflow git clone --recurse-submodules https://github.com/tensorflow/tensorflow.git cd tensorflow rm -rf /home/pi/.cache/bazel
- エラーメッセージが出ていないことを確認する
- configure の実行
CC_OPT_FLAGS="-march=native -funsafe-math-optimizations -ftree-vectorize -fomit-frame-pointer" \ CXX_OPT_FLAGS="-march=native -funsafe-math-optimizations -ftree-vectorize -fomit-frame-pointer" \ ./configure
- configure で質問に答える
[y/n] の質問には n + Enter
その他の質問にも Enter
- ビルド(かなりの時間がかかる)(1-2時間以上)
「--local_resources 1024,1.0,1.0」は、ビルド時に使用するメモリサイズを指定するためのもの
bazel test --config=opt --copt="-march=native" --cxxopt="-march=native -D_GLIBCXX_USE_CXX11_ABI=0" -- //tensorflow/... bazel build --config=opt --copt="-march=native" --cxxopt="-march=native -D_GLIBCXX_USE_CXX11_ABI=0" //tensorflow/tools/pip_package:build_pip_package ./bazel-bin/tensorflow/tools/pip_package/build_pip_package /tmp/tensorflow_pkg pip install /tmp/tensorflow_pkg/tensorflow-version-cp35-cp35mu-linux_x86_64.whl exit bazel test -c opt -- //tensorflow/... -//tensorflow/compiler/... bazel build --config=opt //tensorflow/tools/pip_package:build_pip_package ./bazel-bin/tensorflow/tools/pip_package/build_pip_package /tmp/tensorflow_pkg pip install /tmp/tensorflow_pkg/tensorflow-version-cp35-cp35mu-linux_x86_64.whl # grep -Rl 'lib64' | xargs sed -i 's/lib64/lib/g' bazel build --cxxopt="-D_GLIBCXX_USE_CXX11_ABI=0" --local_resources 1024,1.0,1.0 //tensorflow/tools/pip_package:build_pip_package bazel build -c opt --copt="-funsafe-math-optimizations" --copt="-ftree-vectorize" --copt="-fomit-frame-pointer" --local_resources 1024,1.0,1.0 --verbose_failures tensorflow/tools/pip_package:build_pip_package
- ビルド終了の確認
基本ソフトウェアのインストール手順
ソースコードからのビルドに有用なソフトウェアのインストール
OpenCV などのビルドに役立つと判断されるツールやライブラリをインストール
sudo apt -y update sudo apt -y install build-essential gcc g++ make libtool texinfo dpkg-dev pkg-config python3-dev python3-pip python3-numpy python-dev python-pip python-numpy sudo apt -y install git make cmake cmake-curses-gui autoconf automake flex bison clang binutils swig curl sudo apt -y install subversion ccache sudo apt -y install zip unzip sudo apt -y install libopenblas-dev liblapack-dev libtbb-dev nvidia-cuda-dev # sudo apt -y install nvidia-cuda-toolkit sudo apt -y install libxi-dev libsndfile1-dev libopenexr-dev libalut-dev libsdl2-dev libavdevice-dev libavformat-dev libavutil-dev libavcodec-dev libswscale-dev libx264-dev libxvidcore-dev libmp3lame-dev libspnav-dev libglu1-mesa-dev libv4l-dev sudo apt -y install libbz2-dev libsqlite3-dev libssl-dev libreadline-dev libpng-dev libtiff-dev zlib1g-dev libx11-dev libgl1-mesa-dev libxrandr-dev libxxf86dga-dev libxcursor-dev libfreetype6-dev libvorbis-dev libeigen3-dev libopenal-dev libode-dev libbullet-dev libgtk2.0-dev # sudo apt -y install libjasper-dev sudo apt -y install libgtk-3-dev libatlas-base-dev gfortran python2.7-dev python3-dev sudo apt -y install nvidia-cg-toolkit # jpeg はソースコードからビルドする sudo apt -y install libjpeg62-turbo-dev cd /tmp wget http://www.ijg.org/files/jpegsrc.v9c.tar.gz tar -xvzof jpegsrc.v9c.tar.gz cd jpeg-9c ./configure make sudo make install
プログラミング,開発環境
source /usr/local/bin/virtualenv-wrapper.sh mkvirtualenv --python=/usr/bin/python3 py35 lsvirtualenv source /usr/local/bin/virtualenv-wrapper.sh workon py35 # cd /tmp sudo apt -y install caffe-cpu sudo apt -y install idle-python3.5 sudo apt -y install ipython3 sudo apt -y install ipython3-qtconsole sudo apt -y install jupyter-nbextension-jupyter-js-widgets sudo apt -y install libpython3-all-dev sudo apt -y install python3-bleach sudo apt -y install python3-bz2file sudo apt -y install python3-django sudo apt -y install python3-flask sudo apt -y install python3-gdal sudo apt -y install python3-geopandas sudo apt -y install python3-h5py sudo apt -y install python3-hdf5storage sudo apt -y install python3-html5lib sudo apt -y install python3-ipykernel sudo apt -y install python3-ipython sudo apt -y install python3-ipython-genutils sudo apt -y install python3-matplotlib sudo apt -y install python3-msgpack sudo apt -y install python3-numpy sudo apt -y install python3-overpy sudo apt -y install python3-pandas sudo apt -y install python3-protobuf sudo apt -y install python3-psutil sudo apt -y install python3-pydot sudo apt -y install python3-pygame sudo apt -y install python3-pygraphviz sudo apt -y install python3-pylint-common sudo apt -y install python3-pyproj sudo apt -y install python3-redis sudo apt -y install python3-scipy sudo apt -y install python3-seaborn sudo apt -y install python3-six sudo apt -y install python3-skimage sudo apt -y install python3-skimage-lib sudo apt -y install python3-sklearn sudo apt -y install python3-sklearn-lib sudo apt -y install python3-sklearn-pandas sudo apt -y install python3-sympy sudo apt -y install python3-yaml # pip install --ignore-installed altair pip install --ignore-installed distributed pip install --ignore-installed pillow pip install --ignore-installed sqlite pip install --ignore-installed gensim pip install --ignore-installed cython # pip install --ignore-installed opencv pip install --ignore-installed cocos2d pip install git+https://github.com/davisking/dlib pip install git+https://github.com/ageitgey/face_recognition pip install -U --ignore-installed mtcnn pip install git+https://github.com/jrosebr1/imutils # pip install --ignore-installed --upgrade tensorflow pip install git+https://github.com/keras-team/keras pip install --ignore-installed --upgrade pyglet pip install --ignore-installed --upgrade cocos2d pip install git+https://github.com/python-visualization/folium pip install --ignore-installed --upgrade exifread pip install --ignore-installed --upgrade haversine pip install --ignore-installed --upgrade utm
sudo apt -y update sudo apt -y install python3-qtpy sudo apt -y install python3-spyder pip install --ignore-installed --upgrade spyder_kernels pip install --ignore-installed --upgrade pycodestyle pip install --ignore-installed --upgrade rope pip install --ignore-installed --upgrade jedi cd /tmp git clone https://github.com/spyder-ide/spyder.git cd spyder git pull ~/.virtualenvs/py35/bin/python3 bootstrap.py ~/.virtualenvs/py35/bin/python3 setup.py install
source /usr/local/bin/virtualenv-wrapper.sh mkvirtualenv --python=/usr/bin/python py27 lsvirtualenv source /usr/local/bin/virtualenv-wrapper.sh workon py27 cd /tmp sudo rm -f get-pip.py curl -O https://bootstrap.pypa.io/get-pip.py ~/.virtualenvs/py27/bin/python get-pip.py pip install numpy pip install PyOpenGL
cd /tmp # sudo apt -y install oracle-java8-jdk sudo apt -y install ant sudo apt -y install bluej sudo apt -y install libguava-java sudo apt -y install greenfoot sudo apt -y install eclipse pleiades echo "-javaagent:/usr/share/eclipse/plugins/jp.sourceforge.mergedoc.pleiades/pleiades.jar " | sudo tee -a /usr/lib/eclipse/eclipse.ini java -version

cd /tmp sudo apt -y install build-essential sudo apt -y install g++ # GDB Enhanced Features, wget -q -O- https://github.com/hugsy/gef/raw/master/scripts/gef.sh | sh # sudo apt -y install libgstreamer1.0-0:amd64 libgstreamer-plugins-base1.0-0:amd64 sudo apt -y install r-base # echo 'options(repos="http://cran.rstudio.com"); update.packages(checkBuilt=TRUE, ask=FALSE)' | sudo R --vanilla sudo rm /tmp/a.$$.r echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r echo 'biocLite("EBImage") ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'install.packages("dplyr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla echo 'install.packages("plyr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla echo 'install.packages("dplyr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla echo 'install.packages("reshape2", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla echo 'install.packages("ggplot2", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla echo 'install.packages("knitr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla echo 'install.packages("sp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla echo 'install.packages("raster", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla sudo apt -y install gdal-bin echo 'install.packages("rgdal", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html"))' | sudo R --vanilla # sudo apt -y install r-recommended # R.Studio は書きかけ sudo apt -y install gdebi-core sudo apt -y install libxi6:amd64 libqt5gui5:amd64 sudo apt -y install libgl1-glvnd-nvidia-glx:amd64 libxcomposite1:amd64 libicu-dev:amd64 libxml2-dev:amd64 libxslt-dev:amd64 sudo apt -y install rstudio if [ ! -x /usr/bin/rstudio ]; then echo /usr/bin/rstudio wget https://download1.rstudio.org/rstudio-xenial-1.1.453-amd64.deb sudo dpkg -i rstudio-xenial-1.1.453-amd64.deb fi sudo apt -y install scratch2 sudo apt -y install octave octave-* # nodejs and npm for debian linux curl -sL https://deb.nodesource.com/setup_10.x | sudo -E bash - sudo apt -y install -y nodejs sudo npm install -g n sudo apt -y install android-sdk
ツール
Git, git-hub (GitHub), CMake, cmake-gui, ImageMagick (画像), FFMpeg (ビデオデータ処理), p7zip (圧縮, 展開), Graphviz (グラフデータ構造可視化), net-tools, hwinfo (ハードウェア情報), gdal (地理情報), tesseract, jq (JSON整形), jsonlint (JSONチェッカ)
sudo apt -y update sudo apt -y install git sudo apt -y install git-hub sudo apt -y install cmake sudo apt -y install cmake-curses-gui sudo apt -y install cmake-gui sudo apt -y install imagemagick sudo apt -y install ffmpeg sudo apt -y install p7zip-full sudo apt -y install graphviz graphviz-dev sudo apt -y install net-tools sudo apt -y install hwinfo sudo apt -y install gdal-bin libgdal-dev sudo apt -y install tesseract-ocr tesseract-ocr-jpn libtesseract-dev libleptonica-dev tesseract-ocr-jpn sudo apt -y install jq sudo apt -y install jsonlint
アクセサリ
xpdf (PDF リーダ), shutter (画面キャプチャ), catfish (ファイル検索)
sudo apt -y update sudo apt -y install xpdf sudo apt -y install shutter sudo apt -y install libgoo-canvas-perl sudo apt -y install catfish
インターネット
FileZilla (ファイル転送), firefox (Webブラウザ), Wireshark (ネットワーク), netcat (通信), AWS Command Line Interface (AWS), RealVNCViewer (リモート接続)
sudo apt -y update sudo apt -y install filezilla sudo apt -y install firefox-esr sudo apt -y install firefox-esr-l10n-ja sudo apt -y install wireshark sudo apt -y install netcat sudo apt -y install awscli aws-shell # RealVNCViewer cd /tmp sudo apt -y install libice6 libsm6 wget https://www.realvnc.com/download/file/viewer.files/VNC-Viewer-6.17.1113-Linux-x64.deb sudo dpkg -i VNC-Viewer-6.17.1113-Linux-x64.deb
エディタ
Visual Studio Code, Emacs, leafpad, gedit
# # Visual Studio Code # # see https://code.visualstudio.com/docs/setup/linux # cd /tmp # curl https://packages.microsoft.com/keys/microsoft.asc | gpg --dearmor > microsoft.gpg # sudo mv microsoft.gpg /etc/apt/trusted.gpg.d/microsoft.gpg # sudo sh -c 'echo "deb [arch=amd64] https://packages.microsoft.com/repos/vscode stable main" > /etc/apt/sources.list.d/vscode.list' # sudo apt -y update # sudo apt -y install code # emacs sudo apt -y install emacs # leafpad sudo apt -y install leafpad # gedit sudo apt -y install gedit gedit-plugins sudo apt -y install gedit-developer-plugins
グラフィックス
Blender (3次元), POV-ray, MeshLab, MakeHuman, Inkscape, GIMP, pinta, CloudCompare
sudo apt -y update sudo apt -y install blender sudo apt -y install povray povray-examples sudo apt -y install meshlab sudo apt -y install makehuman sudo apt -y install inkscape sudo apt -y install gimp sudo apt -y install pinta # CloudCompare sudo apt -y install qtbase5-dev qtdeclarative5-dev qt5-default qttools5-dev libqt5widgets5 libqwt-qt5-dev libqt5svg5-dev cd /tmp wget https://github.com/CloudCompare/CloudCompare/archive/master.zip unzip master.zip rm -f master.zip cd CloudCompare-master rm -rf build mkdir build cd build cmake .. cmake --build . sudo make install # Blender VR cd /tmp sudo rm -f blender-2.74-a8adeeb-linux-glibc211-x86_64.tar.bz2 wget ftp://blendervrdownloads:blendervr@ftp.limsi.fr/compiled/blender-2.74-a8adeeb-linux-glibc211-x86_64.tar.bz2 cd /usr/local sudo rm -rf /usr/local/blender-2.74-a8adeeb-linux-glibc211-x86_64 sudo tar -xpvjof /tmp/blender-2.74-a8adeeb-linux-glibc211-x86_64.tar.bz2 sudo chown -R $USER /usr/local/blender-2.74-a8adeeb-linux-glibc211-x86_64 sudo rm -f /usr/bin/blendervr sudo ln -s /usr/local/blender-2.74-a8adeeb-linux-glibc211-x86_64/blender /usr/bin/blendervr
地図情報
QGIS , Debian GIS Data, Debian GIS OSM
sudo apt -y update sudo apt -y install qgis # Debian GIS sudo apt -y install gis-data gis-osm
ビデオ
VLC media player (メディア), Openshot
sudo apt -y update sudo apt -y install vlc sudo apt -y install openshot
データベース
SQLite 3, DB Browser for SQLite (sqlitebrowser), sqliteman, Redis 64bit
sudo apt -y update sudo apt -y install sqlite3 sudo apt -y install sqlitebrowser sudo apt -y install redis-server redis-tools # sqliteman sudo apt -y install libqscintilla2-dev cd /tmp wget https://sourceforge.net/projects/sqliteman/files/sqliteman/1.2.2/sqliteman-1.2.2.tar.bz2 tar -xvjof sqliteman-1.2.2.tar.bz2 cd sqliteman-1.2.2 rm -rf build mkdir build cd build cmake .. cmake --build . sudo make install
ライブラリ
OpenCV (コンピュータビジョン),NVIDIA CUDA, OpenALPR, OpenNI2, libPCL, Guava, Dlib
source /usr/local/bin/virtualenv-wrapper.sh workon py35 # sudo apt -y install nvidia-cuda-dev nvidia-cuda-doc nvidia-cuda-gdb # sudo apt -y install nvidia-cuda-toolkit sudo apt -y install openalpr openalpr-utils libopenalpr-dev sudo apt -y install openni2-utils libopenni2-dev sudo apt -y install libpcl-dev sudo apt -y install libguava-java # pip install numpy cd /tmp rm -rf opencv rm -rf opencv_contrib git clone https://github.com/opencv/opencv.git git clone https://github.com/opencv/opencv_contrib.git sudo apt install python-dev python3-dev cd opencv rm -rf build mkdir build cd build cmake -D CMAKE_BUILD_TYPE=RELEASE \ -D CMAKE_INSTALL_PREFIX=/usr/local \ -D INSTALL_PYTHON_EXAMPLES=ON \ -D OPENCV_EXTRA_MODULES_PATH=/tmp/opencv_contrib/modules \ -D BUILD_opencv_python2=OFF \ -D BUILD_opencv_python3=ON \ -D PYTHON_DEFAULT_EXECUTABLE=python3 \ -D BUILD_EXAMPLES=ON .. make sudo make install sudo /sbin/ldconfig rm -f ~/.virtualenvs/py35/lib/python3.5/site-packages/ cp /tmp/opencv/build/lib/python3/cv2*.so ~/.virtualenvs/py35/lib/python3.5/site-packages python -c "import cv2; print( cv2.__version__ )"
DLib
cd /tmp wget http://dlib.net/files/dlib-19.15.zip unzip dlib-19.15.zip cd dlib-19.15 rm -rf build mkdir build cd build cmake .. cmake --build . sudo make install cd /tmp/dlib-19.15 python setup.py install
設計
freecad
sudo apt -y update sudo apt -y install freecad
ゲームフレームワーク,ゲームエンジン
# Panda3d cd /tmp sudo rm -f master.zip wget https://github.com/panda3d/panda3d/archive/master.zip unzip master.zip rm -f master.zip cd panda3d-master source /usr/local/bin/virtualenv-wrapper.sh workon py35 ~/.virtualenvs/py35/bin/python3 makepanda/makepanda.py --everything --installer --no-egl --no-gles --no-gles2 --no-opencv sudo dpkg -i panda3d*.deb # pip install --pre --extra-index-url https://archive.panda3d.org/ panda3d
Docker類
Docker, docker-compose
sudo apt -y update sudo apt -y install docker sudo apt -y install docker-compose
R のパッケージを追加
cd /tmp sudo apt -y install libxml2-dev libfftw3-dev libfreetype6-dev sudo apt -y install libnlopt-dev echo 'options(repos="http://cran.rstudio.com"); update.packages(checkBuilt=TRUE, ask=FALSE)' | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # EBImage sudo rm /tmp/a.$$.r echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r echo 'biocLite("EBImage") ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # dplyr echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("dplyr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # qvalue sudo rm /tmp/a.$$.r echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r echo 'biocLite("qvalue") ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # pam echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("pam", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # pca3d echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("pca3d", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # tm echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("tm", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # mmand echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("mmand", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # devtools echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("devtools", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # ctv echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("ctv", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # osmar echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("osmar", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # pi0 echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("pi0", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # leaps echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("leaps", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # ifs echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("ifa", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # BMA echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("BMA", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # WriteXLS echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("WriteXLS", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # CHsharp echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("CHsharp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # brew echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("brew", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # data.table echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("data.table", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # pcaPP echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("pcaPP", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # fastICA echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("fastICA", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # zoo echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("zoo", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # base echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("abind", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("boot", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("car", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("chron", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("cluster", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("codetools", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("colorspace", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("effects", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("foreign", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("lattice", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("lmtest", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("mgcv", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("multcomp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("mvtnorm", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("relimp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("rpart", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("sandwich", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("sm", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("spatial", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("strucchange", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("survival", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # additional echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("catspec", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("cluster", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("deldir", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("diagram", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("fields", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("fftw", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("gregmisc", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("igraph", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("nlme", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("nnclust", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("png", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("pixmap", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("pvclust", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("rgl", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("scatterplot3d", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("som", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("Hmisc", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("Rcmdr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("RcmdrPlugin.KMggplot2", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("RSQLite", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("CCA", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("KernSmooth", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("MASS", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("Matrix", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("Rcmdr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # more echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("ggplot2", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("xlsxjars", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("xlsx", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("shiny", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("chron", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("sqldf", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("plyr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("entropy", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("moments", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("spatstat", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("png", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("biOps", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("biOpsGUI", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("maptools", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("caTools", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r # echo 'install.packages("class", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r # cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("evd", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("its", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("mapproj", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("mnormt", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("sm", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("sp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("stabledist", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("timeSeries", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("tseries", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("bayesm", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("gdata", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("gmodels", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("rpart", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("Zelig", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("forecast", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # again echo 'options(repos="http://cran.rstudio.com")' > /tmp/a.$$.r echo 'update.packages(checkBuilt=TRUE, ask=FALSE, repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r echo 'biocLite("osmar") ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r echo 'biocLite("Rgraphviz") ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r echo 'biocLite("hypergraph") ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r echo 'biocLite("RBGL") ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'source("http://bioconductor.org/biocLite.R")' > /tmp/a.$$.r echo 'biocLite("GraphPart") ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("XML", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("gridExtra", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("gridSVG", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("png", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("jpeg", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("igraph", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("Rcpp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("RcppExamples", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("mvoutlier", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("randomForest", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("plyr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("reshape2", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("forecast", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("stringr", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("lubridate", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("sqldf", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("ggplot2", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("party", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("gdm", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("survival", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("caTools", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("Epi", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("vcd", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("Rz", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("parallel", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("compiler", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("Imap", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("changepoint", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("gstat", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("sp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("rgeos", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("maptools", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("shapefiles", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("spsurvey", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("sp", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("RColorBrewer", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("forecast", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("psych", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("xts", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("timeSeries", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("gregmisc", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("mclust", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("topmodel", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("insol", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("rJava", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("RWekajars", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("RWeka", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("Snowball", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("lsa", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # sudo rm /tmp/a.$$.r echo 'options(repos="http://cran.rstudio.com") ' > /tmp/a.$$.r echo 'install.packages("stringdist", repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # again echo 'options(repos="http://cran.rstudio.com")' > /tmp/a.$$.r echo 'update.packages(checkBuilt=TRUE, ask=FALSE, repos="http://cran.rstudio.com/", clean=TRUE, INSTALL_opts=c("--no-docs", "--no-html")) ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla # again and again echo 'options(repos="http://cran.rstudio.com")' > /tmp/a.$$.r echo 'update.packages(checkBuilt=TRUE, ask=FALSE, repos="http://cran.rstudio.com/") ' >> /tmp/a.$$.r cat /tmp/a.$$.r | sudo R --vanilla